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The map label for this gene is ycdC [C]

Identifier: 83593269

GI number: 83593269

Start: 2240956

End: 2241564

Strand: Direct

Name: ycdC [C]

Synonym: Rru_A1934

Alternate gene names: 83593269

Gene position: 2240956-2241564 (Clockwise)

Preceding gene: 83593263

Following gene: 83593273

Centisome position: 51.48

GC content: 65.02

Gene sequence:

>609_bases
ATGACCCGCTGGAAAACCACCGATCTTGATTCCGCGGCCCTCTTCCAGCGCAAGCGGGATGCGGTGATTCACGAAGCGGC
GCAGGCTTTCAGTCGGTTTGGCTACCACGGCACCTCGCTTGACGATATCGCCCGCGTGCTCAACGTCACCAAGGCGGCGC
TTTACTACTATGTCGCCAGCAAACAGGAGCTTCTGGCCCATTGCCATGCCATCGGGCTGGGGATCTGCGAGGCGTCCCTG
GCCGATGGCCGGGCCAAGGCCACCAGCGGTCTGGATGCGATCGACGGCTTCGTCCGCGCCTATGTCGATCGCGCCACCGG
GGAATTGGGGGTCTGTCTGCTGATTGGCGATCTGTCGTGCCTGGCTCCGGCGGCGCGGACCGAGGTGATGGCGCGACGCG
ACGCCTTCGAGGGGTCGTTGCGCGATCTGATCCGCGCCGGCCGCGAGGACGGCGGGATCAGGCCCGATGTCGATCCCAAG
CTCAGCTGTTTTCAGATCCTTGGCGCGCTCAATCACATCCCGCGCTGGTACAGCCCAACGGGCCCGAACTCGCCCGCCGA
GCTTGCCCAGTATTTCGCCCGCCAGATCCACGCCAGCCTGTCGATCTGA

Upstream 100 bases:

>100_bases
TACGAACTTGAAAAAACTGCTTAACGACGATTTGATAATTCTACTCACGCCATAAGATACGCAGGGTCTCTACCGCCCTG
ACCCCAAAAAGGATGCATCG

Downstream 100 bases:

>100_bases
TCGACAAAACCCTTCAACCCTGTCGATCTGATCGACAAAACCCTTCAACCCTGTCGATCTGATCGACAAAACCCTTCACC
CCGTCGATCAGATCGAGACG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator TetR/AcrR Families; TetR Family Regulatory

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTRWKTTDLDSAALFQRKRDAVIHEAAQAFSRFGYHGTSLDDIARVLNVTKAALYYYVASKQELLAHCHAIGLGICEASL
ADGRAKATSGLDAIDGFVRAYVDRATGELGVCLLIGDLSCLAPAARTEVMARRDAFEGSLRDLIRAGREDGGIRPDVDPK
LSCFQILGALNHIPRWYSPTGPNSPAELAQYFARQIHASLSI

Sequences:

>Translated_202_residues
MTRWKTTDLDSAALFQRKRDAVIHEAAQAFSRFGYHGTSLDDIARVLNVTKAALYYYVASKQELLAHCHAIGLGICEASL
ADGRAKATSGLDAIDGFVRAYVDRATGELGVCLLIGDLSCLAPAARTEVMARRDAFEGSLRDLIRAGREDGGIRPDVDPK
LSCFQILGALNHIPRWYSPTGPNSPAELAQYFARQIHASLSI
>Mature_201_residues
TRWKTTDLDSAALFQRKRDAVIHEAAQAFSRFGYHGTSLDDIARVLNVTKAALYYYVASKQELLAHCHAIGLGICEASLA
DGRAKATSGLDAIDGFVRAYVDRATGELGVCLLIGDLSCLAPAARTEVMARRDAFEGSLRDLIRAGREDGGIRPDVDPKL
SCFQILGALNHIPRWYSPTGPNSPAELAQYFARQIHASLSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21965; Mature: 21834

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRWKTTDLDSAALFQRKRDAVIHEAAQAFSRFGYHGTSLDDIARVLNVTKAALYYYVAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
KQELLAHCHAIGLGICEASLADGRAKATSGLDAIDGFVRAYVDRATGELGVCLLIGDLSC
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHEECCHHH
LAPAARTEVMARRDAFEGSLRDLIRAGREDGGIRPDVDPKLSCFQILGALNHIPRWYSPT
HHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
GPNSPAELAQYFARQIHASLSI
CCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRWKTTDLDSAALFQRKRDAVIHEAAQAFSRFGYHGTSLDDIARVLNVTKAALYYYVAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
KQELLAHCHAIGLGICEASLADGRAKATSGLDAIDGFVRAYVDRATGELGVCLLIGDLSC
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHEECCHHH
LAPAARTEVMARRDAFEGSLRDLIRAGREDGGIRPDVDPKLSCFQILGALNHIPRWYSPT
HHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
GPNSPAELAQYFARQIHASLSI
CCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA