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The map label for this gene is ygaD [H]

Identifier: 83593205

GI number: 83593205

Start: 2167617

End: 2168228

Strand: Direct

Name: ygaD [H]

Synonym: Rru_A1870

Alternate gene names: 83593205

Gene position: 2167617-2168228 (Clockwise)

Preceding gene: 83593204

Following gene: 83593206

Centisome position: 49.8

GC content: 68.63

Gene sequence:

>612_bases
ATGACCGCCCCCTTCCCCAAGGATCTGGTTTTGCATGCCGAACAGGTCCTCGCGGCGCTGCGTGCCAAGGGCTTCATGCT
GGCGGCCGCGGAATCGTGCACCGGCGGCCTGATCACCGCGGCCCTGACCACCGTCGCCGGCTCCAGCGCCGGCGTCGATC
GCGGCTTCGTGACCTATTCCAACGAGGCCAAGACCCAGATGCTGGGCGTTCCCGAGGACATGCTGGCCGCCCATGGCGCC
GTCAGCGCCGAGGTCGCCCAGGCGATGGCCGAAGGGGCTTTGAATAATTCCCAGGCGGCGATCGCCATTTCGGTCACCGG
CATCGCCGGACCCGAGGGCGGCTCGCCCGACAAGCCGGTCGGGCTGGTCTTCATGGCCTGCGCCCTGGCCGACGGGCCGG
TGGTGGTGCGCCGCCACATCTTCGCCGGCAACCGCAACGATATCCGCCACGCCACGGTTAATGGCGCCTTCGACATGATC
TTGCGCACCCTGGAAGACGAGGCCGCCCAATCCGCGCCCGGCTCCGCCTATGATCCCGAGCCCGGCAAAAGCCGCAAAAT
CGAAGACGACGAGGCGTCCGAGCCCGCGTCCCCGGCCCCCGAAAAGCCCTGA

Upstream 100 bases:

>100_bases
GGCTTTGGCATCATGCTTGATGATGGGTTCGCCGCCGTCTATTCCACTTGTATGATGGCGCTTTACGTCCATTATTTTAT
GTGACCGATAAGGATTTGAT

Downstream 100 bases:

>100_bases
AATTCCCCGTCCGAGACGACTTATTACAGTTTTGTTGCAGTCGCTCCTTGAATGCGGCGACTGCCCTTTGCCATATAAAG
CGCACGACGTGCCCCTAACC

Product: CinA-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTAPFPKDLVLHAEQVLAALRAKGFMLAAAESCTGGLITAALTTVAGSSAGVDRGFVTYSNEAKTQMLGVPEDMLAAHGA
VSAEVAQAMAEGALNNSQAAIAISVTGIAGPEGGSPDKPVGLVFMACALADGPVVVRRHIFAGNRNDIRHATVNGAFDMI
LRTLEDEAAQSAPGSAYDPEPGKSRKIEDDEASEPASPAPEKP

Sequences:

>Translated_203_residues
MTAPFPKDLVLHAEQVLAALRAKGFMLAAAESCTGGLITAALTTVAGSSAGVDRGFVTYSNEAKTQMLGVPEDMLAAHGA
VSAEVAQAMAEGALNNSQAAIAISVTGIAGPEGGSPDKPVGLVFMACALADGPVVVRRHIFAGNRNDIRHATVNGAFDMI
LRTLEDEAAQSAPGSAYDPEPGKSRKIEDDEASEPASPAPEKP
>Mature_202_residues
TAPFPKDLVLHAEQVLAALRAKGFMLAAAESCTGGLITAALTTVAGSSAGVDRGFVTYSNEAKTQMLGVPEDMLAAHGAV
SAEVAQAMAEGALNNSQAAIAISVTGIAGPEGGSPDKPVGLVFMACALADGPVVVRRHIFAGNRNDIRHATVNGAFDMIL
RTLEDEAAQSAPGSAYDPEPGKSRKIEDDEASEPASPAPEKP

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=157, Percent_Identity=49.0445859872611, Blast_Score=151, Evalue=2e-38,
Organism=Escherichia coli, GI1787818, Length=125, Percent_Identity=37.6, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 20711; Mature: 20579

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPFPKDLVLHAEQVLAALRAKGFMLAAAESCTGGLITAALTTVAGSSAGVDRGFVTYS
CCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEC
NEAKTQMLGVPEDMLAAHGAVSAEVAQAMAEGALNNSQAAIAISVTGIAGPEGGSPDKPV
CCCHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCH
GLVFMACALADGPVVVRRHIFAGNRNDIRHATVNGAFDMILRTLEDEAAQSAPGSAYDPE
HHHHHHHHHCCCCCEEHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PGKSRKIEDDEASEPASPAPEKP
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAPFPKDLVLHAEQVLAALRAKGFMLAAAESCTGGLITAALTTVAGSSAGVDRGFVTYS
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEC
NEAKTQMLGVPEDMLAAHGAVSAEVAQAMAEGALNNSQAAIAISVTGIAGPEGGSPDKPV
CCCHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCH
GLVFMACALADGPVVVRRHIFAGNRNDIRHATVNGAFDMILRTLEDEAAQSAPGSAYDPE
HHHHHHHHHCCCCCEEHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PGKSRKIEDDEASEPASPAPEKP
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]