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The map label for this gene is yafC [H]

Identifier: 83593049

GI number: 83593049

Start: 2006777

End: 2007697

Strand: Direct

Name: yafC [H]

Synonym: Rru_A1714

Alternate gene names: 83593049

Gene position: 2006777-2007697 (Clockwise)

Preceding gene: 83593046

Following gene: 83593053

Centisome position: 46.1

GC content: 67.86

Gene sequence:

>921_bases
ATGGATAAATCAGAGGTCACGCTTGAACGCCTGCGCAGCTTCGTGCGCGTCGCCGAACGGGGCAATCTGTCGGCGGTCGC
CCGCGAATTGGGGCTTGGGCAATCGACCATCACCCGCCACTTGCGCGAGTTGGAAGAGGCCGTCGGCGTGGCGTTGCTCA
GCCGCACCACGCGCAGGGTCGTCCTGACCGACGAGGGAAGCCGTTATTATGCCGACAGCCTGCAGATCCTGCGCCTAGTC
GATCAGGCGGGCGAAGAAGCCCGCGCGGCGCGGGGCGCCCCGGCGGGAACGATCCGCCTGTCCTGCACGGCGGCCTTGGG
TGTTCTTCATATCAGCGGGCTGATCTTCGCCTTTCAGGATCGCTACCCGGATATCCGCGTCGATCTTGGCCTGACCGACG
AGCGCATCGATCTTGTGCGCGAGGGCGTCGATATCGCCCTGCGCCTTGGGCCGCTGACCGACAGCGGGCTGAAGCTTCGC
CCCCTTGGTCTCAGCCGCCGCGTGCTTGTCGCCGCGCCCGCCTATCTGGCGGCGCGCGGCCGACCGGCCGCCCCCGGGGA
CCTCGCCGGCCATGACGCCATCACCATGGCGAATGTGGCGGGAAGCGATGTTCTAGAGCTGCGTGGGCCCGATGGTCAGC
GCCACCGCGTGCCGGTTGGCGGGCGGTTGCGCGTCGATCAGGGGCTTGCGGCCCGCGAGGCCTTTCGCGCCGGTCGCGGC
TTTGGCCCCACCCACCGCTGGCTGGTGGACGATCTGGTGGCGGCGGGCGGGCTCGAAGTTATCTTGCCCGGTTACACGCC
GCCCGCCGTGCCCTTGAACATGCTGATCGTTCCCGAGCGGGCGGCGATCGCCCGCGTTCGCTTGCTGGTTGATTTCCTGG
TCGAAAGGATCGGCCAGATCCCTGGACTGGAGACAAGCTAA

Upstream 100 bases:

>100_bases
ATGACGGCACCGATGCGATCCAGAGAAAAACCGATCCCCAACCTAGATCCGGGCGCATTCATCCGCTATCCATGGAAAAT
GGATTTCATTGAGCCGAAAA

Downstream 100 bases:

>100_bases
AGCATCGCTTATCGCCGGGCGAAAAAGCGGTCGTGAACGATCATGCCAATCGCCATCGCCCCGACGAAAATGGCGACGGG
CGCCAAACCCAGGCTCAGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDKSEVTLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRVVLTDEGSRYYADSLQILRLV
DQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQDRYPDIRVDLGLTDERIDLVREGVDIALRLGPLTDSGLKLR
PLGLSRRVLVAAPAYLAARGRPAAPGDLAGHDAITMANVAGSDVLELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRG
FGPTHRWLVDDLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVERIGQIPGLETS

Sequences:

>Translated_306_residues
MDKSEVTLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRVVLTDEGSRYYADSLQILRLV
DQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQDRYPDIRVDLGLTDERIDLVREGVDIALRLGPLTDSGLKLR
PLGLSRRVLVAAPAYLAARGRPAAPGDLAGHDAITMANVAGSDVLELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRG
FGPTHRWLVDDLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVERIGQIPGLETS
>Mature_306_residues
MDKSEVTLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRVVLTDEGSRYYADSLQILRLV
DQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQDRYPDIRVDLGLTDERIDLVREGVDIALRLGPLTDSGLKLR
PLGLSRRVLVAAPAYLAARGRPAAPGDLAGHDAITMANVAGSDVLELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRG
FGPTHRWLVDDLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVERIGQIPGLETS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=32.7759197324415, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=30.4794520547945, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=31.740614334471, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=27.9310344827586, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=303, Percent_Identity=26.7326732673267, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=29.96632996633, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693105, Length=273, Percent_Identity=24.5421245421245, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787879, Length=201, Percent_Identity=31.3432835820896, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787589, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=193, Percent_Identity=27.4611398963731, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787601, Length=140, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=216, Percent_Identity=26.3888888888889, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=29.7297297297297, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788481, Length=264, Percent_Identity=26.5151515151515, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=169, Percent_Identity=27.810650887574, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787806, Length=171, Percent_Identity=29.8245614035088, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32923; Mature: 32923

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKSEVTLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRV
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEE
VLTDEGSRYYADSLQILRLVDQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQD
EEECCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHEECC
RYPDIRVDLGLTDERIDLVREGVDIALRLGPLTDSGLKLRPLGLSRRVLVAAPAYLAARG
CCCCEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCHHHHHCC
RPAAPGDLAGHDAITMANVAGSDVLELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRG
CCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCC
FGPTHRWLVDDLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVERIGQI
CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
PGLETS
CCCCCC
>Mature Secondary Structure
MDKSEVTLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRV
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEE
VLTDEGSRYYADSLQILRLVDQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQD
EEECCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHEECC
RYPDIRVDLGLTDERIDLVREGVDIALRLGPLTDSGLKLRPLGLSRRVLVAAPAYLAARG
CCCCEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCHHHHHCC
RPAAPGDLAGHDAITMANVAGSDVLELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRG
CCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCC
FGPTHRWLVDDLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVERIGQI
CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
PGLETS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]