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The map label for this gene is omp85 [H]

Identifier: 83592929

GI number: 83592929

Start: 1877971

End: 1880328

Strand: Direct

Name: omp85 [H]

Synonym: Rru_A1594

Alternate gene names: 83592929

Gene position: 1877971-1880328 (Clockwise)

Preceding gene: 83592928

Following gene: 83592930

Centisome position: 43.14

GC content: 61.96

Gene sequence:

>2358_bases
GTGAATAAGATCGCCGGATTTATGGGTGCTTTCGCGCTTCTCTTGACAGCCCTTTCAAGCACCCAACCCGCCGCCGCCCA
ATCGGCCGGCGGCCAAAGGGCAGCGGCGCAACGGGGCGGCGCCTTCACCGCTCCCGGCCTTGGTGGCACCATCGATCGCA
TCGTCATCGAGGGAACCCAGCGCATCGATCCCGAAACCGTGCTCACCTATATGACGGTGCGCGAGGGCGATGTTTATGAC
GCGGGCAAGGTCGATCGCTCGCTGAAGAACCTGTTCGAGACCGGGCTGTTCGCCGATGTCAGCATGCGCCACGAGGGCGG
CCGGCTGGTGGTGAGCGTGGCCGAGAACCCGATCATCAACCGCATCGCCTTCGAGGGGAACCGGCGGATCAAGGATCCGC
AGTTGGAGACCGAGATCCAGCTGCGCCCGCGCGTCGTCTATACCCGGGCCAAGGTCCAAGAAGACGTGCAGCGCATCCTC
GAGCTTTATCGCCGCTCGGGCCGCTATGCGGTGTCGGTTGAACCCAAGGTCATCGCCCTGGATCAGAACCGGGTCGATCT
CGCCTTCGAGATCAACGAGGGCCCCTCGACCACGGTTCGCCGTATCTCCTTCGTCGGCAACAAGGTTTACGACGATTCCG
CCCTACGCGAGGTCGTCGAGACCTCCGAGGAGGCCTGGTATCGCTTCTTGTCGTCGACCGACACCTATGATCCCGACCGC
CTGACCTATGACCGCGAATTGCTGCGCCGTCATTACTTGAAGAACGGCTATGCGGATTTCCAGGTGAAGTCGGCCATCGC
CGAACTGTCGACCGACCGCCAAGCTTTTTTCATGACCTTCACGGTGAGCGAGGGCGAGCGCTATCGCTTCGGCCCGGTCG
GTTTGGAAACGACGCTGGCCGAACTTGATCCCGAAGCCCTGCGCGGCGTCATCACCTTCAAGGACGGCGATTGGTATTCG
GCCGACAAGGTGGAGGCCGCCGTCCAGAAGCTGACCGACGAGGTCGGTAATCGCGGCTTCGCCTTTGTCGATGTCAAGCC
GCGGGTGACCCGTGATGCCGACAAGCGCACCATCGCCATCACCTTCCAGATCGACGAGGGCCCGCGCGCCTTCGTGGAAC
GCATCGATATCAACGGCAATGTCCGCACCCTTGACGAGGTCGTGCGCCGCGAGATGATGCTGTCGGAAGGCGACGCCTTC
AATTCCGCCAAGCTGCGCCGCTCGCGTCAGCGCATCCAGGATCTTGGCTTCTTCGAAAAGGTCGAGGTCAACAACGAGCC
CTCTCCGACCGCGCCCGACCGCACCGTGGTCAAAGTGGACGTGACCGAGAAATCGACGGGCGAGGTCTCGTTCGGCGTCG
GTTGGTCAAGCTCGGTCGGCGCCATCATCGAAGTGGGCCTGCGCGAGCGCAATCTTCTGGGCCGGGGTCAGGATCTCAAG
GCCAGCGTCAGCTGGGCTCAGCGTCGCAGCCAGGTCGATATCAGCTTCACCGAGCCCTATTTCCTGGACCGCCGCCTGCG
CGCCGGCGTCGATCTTTACGCCATCGAACGCGACCTGAAGAAAGAAAGCTCTTACGATTACCGGACCTATGGCACGGCCT
TGCGTCTGGGCTATAACTACAACGAAAATCTCGGCCATACCTTCAAGTACACGGCCGAGTTCAACGAGATCACCGACGTC
AAAAGCGACGCCTCGCGGTTCATCAAGAACCAGGACGACAAGACCTATCTGTCGATGATCGGCCATGTCCTGACCTATGA
TCGCCGGGACAGCAAGCTTGATCCCAAGGACGGCTATGTCCTGTCGCTTGGCAATGACATGGCCGGCTTGGGCGGCAGCG
AGTATTTCTTGCGCAGCGATGCCAAGGCGGCCTATTACGCCCCGATCGGCGATTGGTTCGACTGGAACCCCACCTGGGGG
CTGACCGTCAAGGGCGGGGCTGGCTATATGTTCGGCCTGGGCAAGGACGTGAACATCAACCAGCGCTATAATCTGGGTGG
CACCAATCTGCGCGGCTTCGCCAACGCCGGTGCCAGCCCGCGCGATGCCGACACCGATGATGCCCTGGGCGGCAACTGGG
TCACCACCGGCAGCGTCGAAGTCGCCGTTCCCCTGGGTCTGCCGGCCGAACTGGGCCTGAGCGGCCGTCTGTTCAGCGAC
TTCGGCATGATCGGCAAGCCCGATGATTTCGACGAGGCCTTGATGGATGGCGCGGTCTCGCCCAGGCTGTCGGCCGGCGC
CGGTGTCACCTGGGTCTCTCCGGTCGGACCGATTTCGGTCGACCTGGGCTACCCGCTTGTCAAAGAGAAATTTGACAAGA
CCGAAGTCTTCCGTCTCTCCTTTGGATCGAGGTTCTAA

Upstream 100 bases:

>100_bases
AGCTTGATCAATTGGTGATGCATTGAACGGATCGGCGTGGTTTACTGCGCGGCGTGCCGAAATCGGCGGATCTGGACGGA
AGAGAAGCGTGGGAAATACC

Downstream 100 bases:

>100_bases
GAAAATGCGTTTCCTGAAAGGCGCACGGCTGCTCGTCGTGGCGGCGTCGGTCGCCCTGAGCATTCCGGCCGTCCAGGCGG
CCGAGGGTGACTCCTTTCCC

Product: surface antigen D15

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 785; Mature: 785

Protein sequence:

>785_residues
MNKIAGFMGAFALLLTALSSTQPAAAQSAGGQRAAAQRGGAFTAPGLGGTIDRIVIEGTQRIDPETVLTYMTVREGDVYD
AGKVDRSLKNLFETGLFADVSMRHEGGRLVVSVAENPIINRIAFEGNRRIKDPQLETEIQLRPRVVYTRAKVQEDVQRIL
ELYRRSGRYAVSVEPKVIALDQNRVDLAFEINEGPSTTVRRISFVGNKVYDDSALREVVETSEEAWYRFLSSTDTYDPDR
LTYDRELLRRHYLKNGYADFQVKSAIAELSTDRQAFFMTFTVSEGERYRFGPVGLETTLAELDPEALRGVITFKDGDWYS
ADKVEAAVQKLTDEVGNRGFAFVDVKPRVTRDADKRTIAITFQIDEGPRAFVERIDINGNVRTLDEVVRREMMLSEGDAF
NSAKLRRSRQRIQDLGFFEKVEVNNEPSPTAPDRTVVKVDVTEKSTGEVSFGVGWSSSVGAIIEVGLRERNLLGRGQDLK
ASVSWAQRRSQVDISFTEPYFLDRRLRAGVDLYAIERDLKKESSYDYRTYGTALRLGYNYNENLGHTFKYTAEFNEITDV
KSDASRFIKNQDDKTYLSMIGHVLTYDRRDSKLDPKDGYVLSLGNDMAGLGGSEYFLRSDAKAAYYAPIGDWFDWNPTWG
LTVKGGAGYMFGLGKDVNINQRYNLGGTNLRGFANAGASPRDADTDDALGGNWVTTGSVEVAVPLGLPAELGLSGRLFSD
FGMIGKPDDFDEALMDGAVSPRLSAGAGVTWVSPVGPISVDLGYPLVKEKFDKTEVFRLSFGSRF

Sequences:

>Translated_785_residues
MNKIAGFMGAFALLLTALSSTQPAAAQSAGGQRAAAQRGGAFTAPGLGGTIDRIVIEGTQRIDPETVLTYMTVREGDVYD
AGKVDRSLKNLFETGLFADVSMRHEGGRLVVSVAENPIINRIAFEGNRRIKDPQLETEIQLRPRVVYTRAKVQEDVQRIL
ELYRRSGRYAVSVEPKVIALDQNRVDLAFEINEGPSTTVRRISFVGNKVYDDSALREVVETSEEAWYRFLSSTDTYDPDR
LTYDRELLRRHYLKNGYADFQVKSAIAELSTDRQAFFMTFTVSEGERYRFGPVGLETTLAELDPEALRGVITFKDGDWYS
ADKVEAAVQKLTDEVGNRGFAFVDVKPRVTRDADKRTIAITFQIDEGPRAFVERIDINGNVRTLDEVVRREMMLSEGDAF
NSAKLRRSRQRIQDLGFFEKVEVNNEPSPTAPDRTVVKVDVTEKSTGEVSFGVGWSSSVGAIIEVGLRERNLLGRGQDLK
ASVSWAQRRSQVDISFTEPYFLDRRLRAGVDLYAIERDLKKESSYDYRTYGTALRLGYNYNENLGHTFKYTAEFNEITDV
KSDASRFIKNQDDKTYLSMIGHVLTYDRRDSKLDPKDGYVLSLGNDMAGLGGSEYFLRSDAKAAYYAPIGDWFDWNPTWG
LTVKGGAGYMFGLGKDVNINQRYNLGGTNLRGFANAGASPRDADTDDALGGNWVTTGSVEVAVPLGLPAELGLSGRLFSD
FGMIGKPDDFDEALMDGAVSPRLSAGAGVTWVSPVGPISVDLGYPLVKEKFDKTEVFRLSFGSRF
>Mature_785_residues
MNKIAGFMGAFALLLTALSSTQPAAAQSAGGQRAAAQRGGAFTAPGLGGTIDRIVIEGTQRIDPETVLTYMTVREGDVYD
AGKVDRSLKNLFETGLFADVSMRHEGGRLVVSVAENPIINRIAFEGNRRIKDPQLETEIQLRPRVVYTRAKVQEDVQRIL
ELYRRSGRYAVSVEPKVIALDQNRVDLAFEINEGPSTTVRRISFVGNKVYDDSALREVVETSEEAWYRFLSSTDTYDPDR
LTYDRELLRRHYLKNGYADFQVKSAIAELSTDRQAFFMTFTVSEGERYRFGPVGLETTLAELDPEALRGVITFKDGDWYS
ADKVEAAVQKLTDEVGNRGFAFVDVKPRVTRDADKRTIAITFQIDEGPRAFVERIDINGNVRTLDEVVRREMMLSEGDAF
NSAKLRRSRQRIQDLGFFEKVEVNNEPSPTAPDRTVVKVDVTEKSTGEVSFGVGWSSSVGAIIEVGLRERNLLGRGQDLK
ASVSWAQRRSQVDISFTEPYFLDRRLRAGVDLYAIERDLKKESSYDYRTYGTALRLGYNYNENLGHTFKYTAEFNEITDV
KSDASRFIKNQDDKTYLSMIGHVLTYDRRDSKLDPKDGYVLSLGNDMAGLGGSEYFLRSDAKAAYYAPIGDWFDWNPTWG
LTVKGGAGYMFGLGKDVNINQRYNLGGTNLRGFANAGASPRDADTDDALGGNWVTTGSVEVAVPLGLPAELGLSGRLFSD
FGMIGKPDDFDEALMDGAVSPRLSAGAGVTWVSPVGPISVDLGYPLVKEKFDKTEVFRLSFGSRF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=401, Percent_Identity=23.6907730673317, Blast_Score=84, Evalue=4e-16,
Organism=Escherichia coli, GI1786374, Length=801, Percent_Identity=26.8414481897628, Blast_Score=268, Evalue=1e-72,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 87284; Mature: 87284

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIAGFMGAFALLLTALSSTQPAAAQSAGGQRAAAQRGGAFTAPGLGGTIDRIVIEGTQ
CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHCCCCEECCCCCCCEEEEEEECCC
RIDPETVLTYMTVREGDVYDAGKVDRSLKNLFETGLFADVSMRHEGGRLVVSVAENPIIN
CCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCEE
RIAFEGNRRIKDPQLETEIQLRPRVVYTRAKVQEDVQRILELYRRSGRYAVSVEPKVIAL
EEEECCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
DQNRVDLAFEINEGPSTTVRRISFVGNKVYDDSALREVVETSEEAWYRFLSSTDTYDPDR
CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
LTYDRELLRRHYLKNGYADFQVKSAIAELSTDRQAFFMTFTVSEGERYRFGPVGLETTLA
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCHHHHHH
ELDPEALRGVITFKDGDWYSADKVEAAVQKLTDEVGNRGFAFVDVKPRVTRDADKRTIAI
HCCHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEE
TFQIDEGPRAFVERIDINGNVRTLDEVVRREMMLSEGDAFNSAKLRRSRQRIQDLGFFEK
EEEECCCCHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEE
VEVNNEPSPTAPDRTVVKVDVTEKSTGEVSFGVGWSSSVGAIIEVGLRERNLLGRGQDLK
EECCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCHHEEECCHHHHHCCCCCCCH
ASVSWAQRRSQVDISFTEPYFLDRRLRAGVDLYAIERDLKKESSYDYRTYGTALRLGYNY
HHHHHHHHCCCEEEEECCCHHHHHHHHCCCEEEEHHHHHHHCCCCCEEEECEEEEEECCC
NENLGHTFKYTAEFNEITDVKSDASRFIKNQDDKTYLSMIGHVLTYDRRDSKLDPKDGYV
CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEE
LSLGNDMAGLGGSEYFLRSDAKAAYYAPIGDWFDWNPTWGLTVKGGAGYMFGLGKDVNIN
EEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCC
QRYNLGGTNLRGFANAGASPRDADTDDALGGNWVTTGSVEVAVPLGLPAELGLSGRLFSD
CEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCHHCCCCCCCHHH
FGMIGKPDDFDEALMDGAVSPRLSAGAGVTWVSPVGPISVDLGYPLVKEKFDKTEVFRLS
CCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCHHHHHCCCCEEEEEE
FGSRF
CCCCC
>Mature Secondary Structure
MNKIAGFMGAFALLLTALSSTQPAAAQSAGGQRAAAQRGGAFTAPGLGGTIDRIVIEGTQ
CCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHCCCCEECCCCCCCEEEEEEECCC
RIDPETVLTYMTVREGDVYDAGKVDRSLKNLFETGLFADVSMRHEGGRLVVSVAENPIIN
CCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCEE
RIAFEGNRRIKDPQLETEIQLRPRVVYTRAKVQEDVQRILELYRRSGRYAVSVEPKVIAL
EEEECCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
DQNRVDLAFEINEGPSTTVRRISFVGNKVYDDSALREVVETSEEAWYRFLSSTDTYDPDR
CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
LTYDRELLRRHYLKNGYADFQVKSAIAELSTDRQAFFMTFTVSEGERYRFGPVGLETTLA
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCHHHHHH
ELDPEALRGVITFKDGDWYSADKVEAAVQKLTDEVGNRGFAFVDVKPRVTRDADKRTIAI
HCCHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEE
TFQIDEGPRAFVERIDINGNVRTLDEVVRREMMLSEGDAFNSAKLRRSRQRIQDLGFFEK
EEEECCCCHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEE
VEVNNEPSPTAPDRTVVKVDVTEKSTGEVSFGVGWSSSVGAIIEVGLRERNLLGRGQDLK
EECCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCHHEEECCHHHHHCCCCCCCH
ASVSWAQRRSQVDISFTEPYFLDRRLRAGVDLYAIERDLKKESSYDYRTYGTALRLGYNY
HHHHHHHHCCCEEEEECCCHHHHHHHHCCCEEEEHHHHHHHCCCCCEEEECEEEEEECCC
NENLGHTFKYTAEFNEITDVKSDASRFIKNQDDKTYLSMIGHVLTYDRRDSKLDPKDGYV
CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEE
LSLGNDMAGLGGSEYFLRSDAKAAYYAPIGDWFDWNPTWGLTVKGGAGYMFGLGKDVNIN
EEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCC
QRYNLGGTNLRGFANAGASPRDADTDDALGGNWVTTGSVEVAVPLGLPAELGLSGRLFSD
CEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCHHCCCCCCCHHH
FGMIGKPDDFDEALMDGAVSPRLSAGAGVTWVSPVGPISVDLGYPLVKEKFDKTEVFRLS
CCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCHHHHHCCCCEEEEEE
FGSRF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]