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The map label for this gene is hup1 [H]

Identifier: 83592888

GI number: 83592888

Start: 1833133

End: 1833408

Strand: Direct

Name: hup1 [H]

Synonym: Rru_A1553

Alternate gene names: 83592888

Gene position: 1833133-1833408 (Clockwise)

Preceding gene: 83592887

Following gene: 83592890

Centisome position: 42.11

GC content: 63.77

Gene sequence:

>276_bases
GTGAATAAGAATGATCTGATTGCCGCCGTCGCCGATAGCGCCGGCCTTTCCAAGGCCGATGCCGCGAAGGCCGTCGACGG
GGTCTTTGACGCAATCACCGGCGCCCTGAAGGACGATCAAGAGGTTCGCCTCGTCGGGTTCGGAACCTTTGCCGTGACCA
AGCGGGCCGCCACCGAGGGTCGCAATCCCCGCACCGGCGAAACCATCGCCATCCCGGCGTCCAAGCAGCCGAAGTTCAAG
CCCGGCAAGGGCCTGAAGGATGCGGTGAACGCTTGA

Upstream 100 bases:

>100_bases
GACGGGATGGTTTCCCGCTTCTAGACTCCGCACCCATCCAAACGGCTGGTTCTTTTCAGATTATCGCACTGGCCTATTAA
CGCAAAAAGGGGGTTGTCCC

Downstream 100 bases:

>100_bases
GGGCCTTTGCCTTTTAGGGCAAATCCCCTGGATCAAACCGCGTTAAAGGAGCCCCCTTTAACGCGGAAATGCTGATCTGG
AGTCACTATTTTAGAGTGGC

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEGRNPRTGETIAIPASKQPKFK
PGKGLKDAVNA

Sequences:

>Translated_91_residues
MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEGRNPRTGETIAIPASKQPKFK
PGKGLKDAVNA
>Mature_91_residues
MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEGRNPRTGETIAIPASKQPKFK
PGKGLKDAVNA

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=54.4444444444444, Blast_Score=95, Evalue=8e-22,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=51.685393258427, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=39.3258426966292, Blast_Score=69, Evalue=6e-14,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9356; Mature: 9356

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEG
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCC
RNPRTGETIAIPASKQPKFKPGKGLKDAVNA
CCCCCCCEEEECCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEG
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCC
RNPRTGETIAIPASKQPKFKPGKGLKDAVNA
CCCCCCCEEEECCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]