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The map label for this gene is yciR [C]

Identifier: 83592879

GI number: 83592879

Start: 1818261

End: 1820555

Strand: Direct

Name: yciR [C]

Synonym: Rru_A1544

Alternate gene names: 83592879

Gene position: 1818261-1820555 (Clockwise)

Preceding gene: 83592877

Following gene: 83592882

Centisome position: 41.77

GC content: 65.36

Gene sequence:

>2295_bases
ATGGCTGCGGATGTCGTCTTTCCCGGGCTCTGCGTTTTTCTCTCGGCCGGTCTGCTGCTGGCCCTTGTTCATGGCCGGCG
GGTCGGCCGGCGGGCCGATCGCCAGTGCCGTCATCTGGCGGCGATCACCGATACGATGTCGGAAGGCTTTTATGTGGTTG
ATGGCGACGACCGCATCGTCATGGCCAATGCCGCCGCCGGACGCATTCTTGGCTATACCCAAGACGATCTGATCGGCGCT
TGCGCCCACGCGCTATTCCATGCCCGCTCCGCCGATGATCCCGATCCGGTGCCGCTTGAGGAGTGCCGGCTCAATCGCGC
CGTGCGCGAGCGCCGCGCCGCCTTTCTGGACGTCGGGCATTTCCGCCATCGTTCGGGCAAGATCATCGCCGTCGAGGTGT
CATGTAACCCGGTGGCCGACACCCTGGCCGAAGAGGGGCGCCGAGGCGGCCTGCTCGGCTGGTTGCTTGATGGCGATGAC
GCCGAGGGGGCGCCGGGCGCCCTCTTGTCGATGGTGACCTTCGTTGATATCACCGCGCGGCGCGAGTCCGAGGCGGCGGT
GATCAAGCTATCCCACGCTGTGGAGCAAAGCTCGGCCAGCATCGTCATCACCGATGCCGATGGCCGTATCGAATACGCCA
ACCCGGCTTTCACCAAGATCAGCGGCTATACGGCGCAAGAGGCCATCGGTCGGCGGCCGAGCATCCTGAAATCGGGCCTT
GTTCCGGCTGAAACCTATCGCGCCCTGTGGCAGACCATCACCAATGGCGGCGAATGGCGCGGCGAGTTTCATAACCGGCG
CAAGGACGGCACGCTTTATTGGGAAATGGCCAGCATCTCGCCCATTCGCGACGCCCGGGGCAAGATCACCAATTTCGTCG
CCGTCAAGGATGACGTCACCGAACGCAAGGCGATCGAAAGCGAGCTCTACCACCGGGCCAATTACGATGCCCTGACCGGC
CTGCCCAATCGACAACTGCTGCTTGACCGGGTGAGCACCGCCCTTGATCTCGCCCGTCGCCATGACCGGCGGGTCGCCGT
GATGTTCATGGATATCGACCGCTTCAAGCAGATCAACGACAGCATGGGCCATGCGGCCGGCGACGTGCTGCTCAAACAGG
CGGCCTCGCGGTTGGCGGCGGTGTTGCGGCCCCAGGATACCCTGGGGCGTTTGGGGGGCGATGAATTCCTGGTGGTCGCC
CCGGGCCTGCGCTGGGAGAGCGAGGCGACGGCGCTGGCGTCGCGGTTGCTTGAAGTCGCCCGCCGGCCGTTCACCATCGA
TGGGCGCGAGGTTTATGTCTCGGTCAGCATCGGCGTCAGCCTGGGGCCGGTCGATGGCACCACCGCCCAGGCCCTGATGC
GCAACGCCGATGCGGCGATGTATCTGGCCAAGGGTGGCGGCCGCGACGCGGCGCATTTCTTCACCCCCGATATCGAAGCG
GCGGCGCGGCGGCGGATGCTGATCGAAAACGGCCTGCGCACCGCCGTTAGCGATGGCAGCCTTTATCTGGCCCTTCAGCC
CATCATCGCCTGCGCCGATCACACGATGATCAAGGCCGAGGCGCTGTTGCGCTGGACCCATCCCCAATTGGGCGGCGTTC
CCCCCAGCGAGTTCATTCCGATCGCCGAGGAAAGCGGCCTGATCCGCGCCATCGGCGCCTGGGTGATCGAAGAGGCGGCC
CGGCTTCTGGTCTCTCTTGATCCGCCCCGCGACGGCGCCTTCCGCCTGGGGATCAATATCGCCAGCAGCCAGTTCACCGG
CGGCCTGCATCACCATGTCGCCGGGATGCTCGCCCGCTATGACCTGGATCCGCGCATGCTGGAAATCGAAATCACCGAAC
GCATGTTGCTTGATCCCTCGCCGGCCATCCTGGAACAGGTCGACGCCCTGCGGGCGATGGGGGTCAGCATCGCCATCGAC
GATTTCGGCACCGGCTATTCGGCGCTGAGTTATCTCAGCGTCTTTCACGTCGATACCCTCAAGATCGACCGCGCCTTCGT
TTCGGTGATGACCGACGAGGCGCGCTCGCAGGCGCTGATCGGCGCGATCGTCGCCTTGGGCCACGAACTGGGCTGCGCCG
TCGTGGCCGAAGGCGTGGAAACCGCCGATCAGGCGCGGCTGCTGGGCGAATTGGCCGTCGATGCCCTGCAGGGATATTTC
CTGGGCCGGCCGACCACCGCCGAGGCGATCAGCGATCGTCTGAACCCAGGGACTGGGCGCCCTTATGACAAGGCCGCGCT
GGGGACGGAGTTCGCCGAGGGCGGCGATCTTGGTCTTTCGGTGGGGGCCCTTTAA

Upstream 100 bases:

>100_bases
GATGATGGTACCGACGAGGCCAGTCCGGCAGCATGCCCCGGAGCGCTCCGTCGATCGCTACGGCGGTCGCGGCGATCCGG
CCGCAGGGTGAGGGCGCGGG

Downstream 100 bases:

>100_bases
GCGGCGGCCGGAAGCGGTCTTGGGGCTGATCGCCGATCAGAACTCGGCCTCAATCTGATTGGCCCCCAGATAAAGGGTGC
GGTTGCCGCCGGCGGCATGG

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MAADVVFPGLCVFLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIVMANAAAGRILGYTQDDLIGA
CAHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGHFRHRSGKIIAVEVSCNPVADTLAEEGRRGGLLGWLLDGDD
AEGAPGALLSMVTFVDITARRESEAAVIKLSHAVEQSSASIVITDADGRIEYANPAFTKISGYTAQEAIGRRPSILKSGL
VPAETYRALWQTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGKITNFVAVKDDVTERKAIESELYHRANYDALTG
LPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVA
PGLRWESEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIEA
AARRRMLIENGLRTAVSDGSLYLALQPIIACADHTMIKAEALLRWTHPQLGGVPPSEFIPIAEESGLIRAIGAWVIEEAA
RLLVSLDPPRDGAFRLGINIASSQFTGGLHHHVAGMLARYDLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAID
DFGTGYSALSYLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVETADQARLLGELAVDALQGYF
LGRPTTAEAISDRLNPGTGRPYDKAALGTEFAEGGDLGLSVGAL

Sequences:

>Translated_764_residues
MAADVVFPGLCVFLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIVMANAAAGRILGYTQDDLIGA
CAHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGHFRHRSGKIIAVEVSCNPVADTLAEEGRRGGLLGWLLDGDD
AEGAPGALLSMVTFVDITARRESEAAVIKLSHAVEQSSASIVITDADGRIEYANPAFTKISGYTAQEAIGRRPSILKSGL
VPAETYRALWQTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGKITNFVAVKDDVTERKAIESELYHRANYDALTG
LPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVA
PGLRWESEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIEA
AARRRMLIENGLRTAVSDGSLYLALQPIIACADHTMIKAEALLRWTHPQLGGVPPSEFIPIAEESGLIRAIGAWVIEEAA
RLLVSLDPPRDGAFRLGINIASSQFTGGLHHHVAGMLARYDLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAID
DFGTGYSALSYLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVETADQARLLGELAVDALQGYF
LGRPTTAEAISDRLNPGTGRPYDKAALGTEFAEGGDLGLSVGAL
>Mature_763_residues
AADVVFPGLCVFLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIVMANAAAGRILGYTQDDLIGAC
AHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGHFRHRSGKIIAVEVSCNPVADTLAEEGRRGGLLGWLLDGDDA
EGAPGALLSMVTFVDITARRESEAAVIKLSHAVEQSSASIVITDADGRIEYANPAFTKISGYTAQEAIGRRPSILKSGLV
PAETYRALWQTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGKITNFVAVKDDVTERKAIESELYHRANYDALTGL
PNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVAP
GLRWESEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIEAA
ARRRMLIENGLRTAVSDGSLYLALQPIIACADHTMIKAEALLRWTHPQLGGVPPSEFIPIAEESGLIRAIGAWVIEEAAR
LLVSLDPPRDGAFRLGINIASSQFTGGLHHHVAGMLARYDLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAIDD
FGTGYSALSYLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVETADQARLLGELAVDALQGYFL
GRPTTAEAISDRLNPGTGRPYDKAALGTEFAEGGDLGLSVGAL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=546, Percent_Identity=32.6007326007326, Blast_Score=272, Evalue=6e-74,
Organism=Escherichia coli, GI87081921, Length=735, Percent_Identity=29.5238095238095, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=28.5714285714286, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI1786507, Length=270, Percent_Identity=32.5925925925926, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=33.0578512396694, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=36.5546218487395, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=37.2881355932203, Blast_Score=139, Evalue=9e-34,
Organism=Escherichia coli, GI1788381, Length=575, Percent_Identity=26.9565217391304, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=35.8870967741936, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI87081743, Length=259, Percent_Identity=29.7297297297297, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1788849, Length=457, Percent_Identity=25.382932166302, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787055, Length=247, Percent_Identity=31.9838056680162, Blast_Score=109, Evalue=8e-25,
Organism=Escherichia coli, GI87082096, Length=446, Percent_Identity=24.8878923766816, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=32.967032967033, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=34.7593582887701, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=156, Percent_Identity=35.2564102564103, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=34.8066298342541, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=282, Percent_Identity=29.0780141843972, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=211, Percent_Identity=30.8056872037915, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.1317365269461, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=29.1208791208791, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=210, Percent_Identity=27.6190476190476, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1789453, Length=111, Percent_Identity=31.5315315315315, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=122, Percent_Identity=30.327868852459, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI87081974, Length=84, Percent_Identity=36.9047619047619, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82478; Mature: 82347

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADVVFPGLCVFLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEE
MANAAAGRILGYTQDDLIGACAHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGH
EEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FRHRSGKIIAVEVSCNPVADTLAEEGRRGGLLGWLLDGDDAEGAPGALLSMVTFVDITAR
HCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHC
RESEAAVIKLSHAVEQSSASIVITDADGRIEYANPAFTKISGYTAQEAIGRRPSILKSGL
CCCCCEEEEEHHHHHCCCCEEEEECCCCEEEECCCCCEEECCCCHHHHHCCCCHHHHHCC
VPAETYRALWQTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGKITNFVAVKDDVT
CCHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEECCCCCCHHHCCCCEEEEEECCCHH
ERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQIND
HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHH
SMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVAPGLRWESEATALASRLLEVA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
RRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIEA
CCCCEECCCEEEEEEEECEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH
AARRRMLIENGLRTAVSDGSLYLALQPIIACADHTMIKAEALLRWTHPQLGGVPPSEFIP
HHHHHHHHHHCCHHHCCCCCEEEEEHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHCCC
IAEESGLIRAIGAWVIEEAARLLVSLDPPRDGAFRLGINIASSQFTGGLHHHVAGMLARY
CCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHC
DLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAIDDFGTGYSALSYLSVFHVDTL
CCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
KIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVETADQARLLGELAVDALQGYF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
LGRPTTAEAISDRLNPGTGRPYDKAALGTEFAEGGDLGLSVGAL
CCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEECCCC
>Mature Secondary Structure 
AADVVFPGLCVFLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEE
MANAAAGRILGYTQDDLIGACAHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGH
EEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FRHRSGKIIAVEVSCNPVADTLAEEGRRGGLLGWLLDGDDAEGAPGALLSMVTFVDITAR
HCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHC
RESEAAVIKLSHAVEQSSASIVITDADGRIEYANPAFTKISGYTAQEAIGRRPSILKSGL
CCCCCEEEEEHHHHHCCCCEEEEECCCCEEEECCCCCEEECCCCHHHHHCCCCHHHHHCC
VPAETYRALWQTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGKITNFVAVKDDVT
CCHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEECCCCCCHHHCCCCEEEEEECCCHH
ERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQIND
HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHH
SMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVAPGLRWESEATALASRLLEVA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
RRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIEA
CCCCEECCCEEEEEEEECEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH
AARRRMLIENGLRTAVSDGSLYLALQPIIACADHTMIKAEALLRWTHPQLGGVPPSEFIP
HHHHHHHHHHCCHHHCCCCCEEEEEHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHCCC
IAEESGLIRAIGAWVIEEAARLLVSLDPPRDGAFRLGINIASSQFTGGLHHHVAGMLARY
CCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHC
DLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAIDDFGTGYSALSYLSVFHVDTL
CCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
KIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVETADQARLLGELAVDALQGYF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
LGRPTTAEAISDRLNPGTGRPYDKAALGTEFAEGGDLGLSVGAL
CCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]