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The map label for this gene is lrrA [H]

Identifier: 83592875

GI number: 83592875

Start: 1813203

End: 1814207

Strand: Reverse

Name: lrrA [H]

Synonym: Rru_A1540

Alternate gene names: 83592875

Gene position: 1814207-1813203 (Counterclockwise)

Preceding gene: 83592878

Following gene: 83592874

Centisome position: 41.68

GC content: 66.27

Gene sequence:

>1005_bases
ATGGACAGCAGACTGCACGCGGGGATACCCTGGGTTAAATTCAGAGTTTTCAATCTTCACTCAAGGAAACGCTTACCTAT
GCCGCTCCCGTCCCGGCCGCCGCCGCCGCTTTCGGATATCGATATCCGCCTGCTCAAGGTTTTCCGCACCGTGGCCGAAT
GCGGCGGCTTCTCGGCGGCCGAGGTTGAATTGAACATCGGCCGGGCGGCGATCAGCCTGCATATGGCCGATCTGGAACGC
CGGCTTGGCCTGCGGCTCTGTCGGCGCGGCCGCGCCGGTTTCCTGCTGACCGACGAGGGCAAACGGGTTCTTGACGCCAC
CTTGCGCCTGCTCGCCGCCCTGGAGAGCTTCCGCGCCGAAATCAACGCCCTGCATTCCAGTCTGCGCGGCGATCTGGCCA
TCGGCATCACCGATAATCTGGTGACCCTGCCGCGCATGCGGGTGACCGACGCCCTGCGCGCCCTCAAGCACCGCGCCCCC
GAGGTGCGGGTGAGCATTCGCATGATCCCGCCCAACGAGATCGAGCGCGGCGTGCTTGACGGCCGGCTTCAGGTCGGGGT
GGTGCCGCGCGGACGGCGCCTGCCCGGGCTGAGCGAGGTCGCGCTCTATGACGAGGACTCGCGGTTGTTTTGCGGCGAGG
GGCATCCGTTGTTCGCCCTGCCCGAGGCGGCGGTCTCGGCCGCCCAGGTGGCGGCGGCCGATGCGGTCGCCCCGACTCTG
GAGCGCCACGGCGCCGCCGAAACCCTGCACCGCGGCCTGAAGGTCACCGCCACCGCCACCGACCGCGAAGGCGTAGCCTT
TCTGGTGCTGACGGGATGCTACCTTGGCTTTCTTCCCACCCATTACGCCCGCCAGTGGGTCGAACGCGGGGTCATGCGCG
CGCTTTTGCCCCAAACCCATCACTACAGCGTGGAATTCGTCGCCATAACCCGCAAGGGTGGCCACCCCAATCTGGTATTG
GAAACCTTTCTCGGCTTGCTTTTTGGCGAGGGATCCGCGCCGTAA

Upstream 100 bases:

>100_bases
CAGGCCACCGGCCAGGGCCGGATCGAAATCGCTCATCAAGGCTATCCTCAAAAAAGGGGTCTTCCGCCGGAGTGGGCGCC
AAAGGCCGGGGCGGCGCGGG

Downstream 100 bases:

>100_bases
GCGGCCTCTTATGCATGAAATTGCATCAGTGGATTGACAGACGCCCGAAAGCGAAGCACTTTTTCATAGGCTCTTGCTGG
CCGAGGCGTCTACTTTGAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MDSRLHAGIPWVKFRVFNLHSRKRLPMPLPSRPPPPLSDIDIRLLKVFRTVAECGGFSAAEVELNIGRAAISLHMADLER
RLGLRLCRRGRAGFLLTDEGKRVLDATLRLLAALESFRAEINALHSSLRGDLAIGITDNLVTLPRMRVTDALRALKHRAP
EVRVSIRMIPPNEIERGVLDGRLQVGVVPRGRRLPGLSEVALYDEDSRLFCGEGHPLFALPEAAVSAAQVAAADAVAPTL
ERHGAAETLHRGLKVTATATDREGVAFLVLTGCYLGFLPTHYARQWVERGVMRALLPQTHHYSVEFVAITRKGGHPNLVL
ETFLGLLFGEGSAP

Sequences:

>Translated_334_residues
MDSRLHAGIPWVKFRVFNLHSRKRLPMPLPSRPPPPLSDIDIRLLKVFRTVAECGGFSAAEVELNIGRAAISLHMADLER
RLGLRLCRRGRAGFLLTDEGKRVLDATLRLLAALESFRAEINALHSSLRGDLAIGITDNLVTLPRMRVTDALRALKHRAP
EVRVSIRMIPPNEIERGVLDGRLQVGVVPRGRRLPGLSEVALYDEDSRLFCGEGHPLFALPEAAVSAAQVAAADAVAPTL
ERHGAAETLHRGLKVTATATDREGVAFLVLTGCYLGFLPTHYARQWVERGVMRALLPQTHHYSVEFVAITRKGGHPNLVL
ETFLGLLFGEGSAP
>Mature_334_residues
MDSRLHAGIPWVKFRVFNLHSRKRLPMPLPSRPPPPLSDIDIRLLKVFRTVAECGGFSAAEVELNIGRAAISLHMADLER
RLGLRLCRRGRAGFLLTDEGKRVLDATLRLLAALESFRAEINALHSSLRGDLAIGITDNLVTLPRMRVTDALRALKHRAP
EVRVSIRMIPPNEIERGVLDGRLQVGVVPRGRRLPGLSEVALYDEDSRLFCGEGHPLFALPEAAVSAAQVAAADAVAPTL
ERHGAAETLHRGLKVTATATDREGVAFLVLTGCYLGFLPTHYARQWVERGVMRALLPQTHHYSVEFVAITRKGGHPNLVL
ETFLGLLFGEGSAP

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=190, Percent_Identity=28.9473684210526, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36669; Mature: 36669

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRLHAGIPWVKFRVFNLHSRKRLPMPLPSRPPPPLSDIDIRLLKVFRTVAECGGFSAA
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
EVELNIGRAAISLHMADLERRLGLRLCRRGRAGFLLTDEGKRVLDATLRLLAALESFRAE
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
INALHSSLRGDLAIGITDNLVTLPRMRVTDALRALKHRAPEVRVSIRMIPPNEIERGVLD
HHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCHHC
GRLQVGVVPRGRRLPGLSEVALYDEDSRLFCGEGHPLFALPEAAVSAAQVAAADAVAPTL
CCEEEEECCCCCCCCCCCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHH
ERHGAAETLHRGLKVTATATDREGVAFLVLTGCYLGFLPTHYARQWVERGVMRALLPQTH
HHCCCHHHHHCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HYSVEFVAITRKGGHPNLVLETFLGLLFGEGSAP
CCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDSRLHAGIPWVKFRVFNLHSRKRLPMPLPSRPPPPLSDIDIRLLKVFRTVAECGGFSAA
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
EVELNIGRAAISLHMADLERRLGLRLCRRGRAGFLLTDEGKRVLDATLRLLAALESFRAE
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
INALHSSLRGDLAIGITDNLVTLPRMRVTDALRALKHRAPEVRVSIRMIPPNEIERGVLD
HHHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCHHC
GRLQVGVVPRGRRLPGLSEVALYDEDSRLFCGEGHPLFALPEAAVSAAQVAAADAVAPTL
CCEEEEECCCCCCCCCCCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHH
ERHGAAETLHRGLKVTATATDREGVAFLVLTGCYLGFLPTHYARQWVERGVMRALLPQTH
HHCCCHHHHHCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HYSVEFVAITRKGGHPNLVLETFLGLLFGEGSAP
CCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8661945 [H]