| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is syrD [H]
Identifier: 83592833
GI number: 83592833
Start: 1768103
End: 1769776
Strand: Direct
Name: syrD [H]
Synonym: Rru_A1497
Alternate gene names: 83592833
Gene position: 1768103-1769776 (Clockwise)
Preceding gene: 83592832
Following gene: 83592836
Centisome position: 40.62
GC content: 67.62
Gene sequence:
>1674_bases ATGACGGCGCCCGGCACGGCCCCCGCGCCCGCCTCTTCTTCGGCGGCGGCCGCGTCACCGCTGGCTCTCGCCTTGCGCCT GCTGCGGCCCTTCTGGCGGCTTGTTCTGCTGTCGACGCTGATGGGCACCCTGGGCGGCATCGCCACCGCCCTGCTGCTGG CGGTCATCAACCGGGCCCTGCGCGGCGAGGGGGATATGGTCAGCTTCGCCTGGGCCTTCGGCGGGCTGTGCCTTGCCGCC CTGCTTGGCCAGGGGGCGGCCGGATTGGGCAGCGCCATCGTTGGCCAGAAGGTGGTGGTGGCGGTGCGTCGGGAGTTGGT CGCCCATATCCTGACCGCGCCGATCGCTCGCCTGGAACGCCTGCGCGTTCACCGGCTGATGGCGACGCTGGGCGGCGATG TCGATGCTTTGAGCGGCTTTTCCCTGGTGCTGTCGGGATTGGGCGTGGCAGTGGCGATCACCTGCGGCTGCCTTGGCTAT CTCGTTTTGCTGTCACCGCCGCTGTTTCTCGTCACGCTTCTGGTTCTGGGGCTGGGCGTGGGGGGTCATGCCCGCATGCG GCGCCTGGGGCAGGCGCGCTTCGCCGCCGCCCGCGCCGCCGAAGACGATCTTCAGCGCCATTACCGGGCGATCACCGAAG GGGCCAAGGAACTGCGGCTCAACCGGCCAAGGCGCATCCGCCTGTTCCACGCCGATCTCGAGGCCACCATCACCCGCATC GCCAAGCTGAGGCTGCGCGGGCTTGGCGTGTTCCTTGGCGCCAATCTGTTTGGCTCGCTGGCGCTTTTCGCGGTGATCGG CGGGATTTTGCTGATGACGCGGGCGGCGCCCGAGGCTATCGGGGTCGAGGACGTCAGCGGCTTCGTTCTGGTTTTATTGT TCATGAAGGGGCCGATGCAGCAGATTCTTGGCGCCCTGCCCAGCCTGGGCCGCGCCCAGATCGCCCTGCGCCGCATCGCC GAGCTTGGCGCCGCCGGCCAGGAGGGGGGCGATCTGCCGGGGTTGGCCCCCGGGATGGGCGAAGGCGCCGTGCCGATGCC AGCCGAGATCACCCTTGAGGCGGTGAGCTACCGCTTTCCCGAGAGCGCCGCCGGCCCGGGATTCACCCTGGGGCCGCTCA CCCTGACCCTGCGCCGGGGCGAGAGCGTGGTGATCACCGGCGAGAACGGCTGTGGCAAAACGACGCTGATCAAGCTGATC CTTGGTCTTTACCAGCCCACCGCCGGGCGCGTTCTGCTTGATGGCCGACCCGTTCGCGCCGGCGAATGGGACGAGTACCG CCAGCTTTTTTCGGCGGTTTTCGCCGATTACCATCTGTTTGACGATGGCATGGCCGAGGGGCGGCAGGCGGCGGAGGCGG CGCGGCTGCTCGATGCCTTTGACCTAGCGACGAAAACCGCGCTCAAGGACGGACGCTTCACCACCACCGACCTGTCGGCG GGCGAACGCAAGCGTCTTGCCCTGATTTTGCTCGCCCTGGAAGGCCGGCCGATCGTGGTCTTTGATGAATGGGCCGCCGA ACAGGATCCGGGGTTCCGTCACCGCTTCTATCACACGGTCTTGCCCGACCTGAAGCGCCAGGGCAGAACCGTGATCGTCG TGTCCCACGATGAAGGGTATTTCGACTGCGCCGATCGCCGCATCGTTTTGAAAAACGGCAAGCTCGCCGGCTAA
Upstream 100 bases:
>100_bases TGGTGCGCGACCGCCTTGCCGCCGGCTTCACCTGGGCCGCCCGCGCCGGCGAGATCGTCGGGCTGTATCATGAGGCGATG GCACACAAGGCGGGGGGGCG
Downstream 100 bases:
>100_bases GGCGCCCGTCACCGCGAGCGCCGGCCCATCGCGCCCCTGATTTCAAGCACCGGGGTGTCCTTGGAACTTTCAGGGGGCGG GCGTAGCGGCGGCAGGGGGA
Product: cyclic peptide transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MTAPGTAPAPASSSAAAASPLALALRLLRPFWRLVLLSTLMGTLGGIATALLLAVINRALRGEGDMVSFAWAFGGLCLAA LLGQGAAGLGSAIVGQKVVVAVRRELVAHILTAPIARLERLRVHRLMATLGGDVDALSGFSLVLSGLGVAVAITCGCLGY LVLLSPPLFLVTLLVLGLGVGGHARMRRLGQARFAAARAAEDDLQRHYRAITEGAKELRLNRPRRIRLFHADLEATITRI AKLRLRGLGVFLGANLFGSLALFAVIGGILLMTRAAPEAIGVEDVSGFVLVLLFMKGPMQQILGALPSLGRAQIALRRIA ELGAAGQEGGDLPGLAPGMGEGAVPMPAEITLEAVSYRFPESAAGPGFTLGPLTLTLRRGESVVITGENGCGKTTLIKLI LGLYQPTAGRVLLDGRPVRAGEWDEYRQLFSAVFADYHLFDDGMAEGRQAAEAARLLDAFDLATKTALKDGRFTTTDLSA GERKRLALILLALEGRPIVVFDEWAAEQDPGFRHRFYHTVLPDLKRQGRTVIVVSHDEGYFDCADRRIVLKNGKLAG
Sequences:
>Translated_557_residues MTAPGTAPAPASSSAAAASPLALALRLLRPFWRLVLLSTLMGTLGGIATALLLAVINRALRGEGDMVSFAWAFGGLCLAA LLGQGAAGLGSAIVGQKVVVAVRRELVAHILTAPIARLERLRVHRLMATLGGDVDALSGFSLVLSGLGVAVAITCGCLGY LVLLSPPLFLVTLLVLGLGVGGHARMRRLGQARFAAARAAEDDLQRHYRAITEGAKELRLNRPRRIRLFHADLEATITRI AKLRLRGLGVFLGANLFGSLALFAVIGGILLMTRAAPEAIGVEDVSGFVLVLLFMKGPMQQILGALPSLGRAQIALRRIA ELGAAGQEGGDLPGLAPGMGEGAVPMPAEITLEAVSYRFPESAAGPGFTLGPLTLTLRRGESVVITGENGCGKTTLIKLI LGLYQPTAGRVLLDGRPVRAGEWDEYRQLFSAVFADYHLFDDGMAEGRQAAEAARLLDAFDLATKTALKDGRFTTTDLSA GERKRLALILLALEGRPIVVFDEWAAEQDPGFRHRFYHTVLPDLKRQGRTVIVVSHDEGYFDCADRRIVLKNGKLAG >Mature_556_residues TAPGTAPAPASSSAAAASPLALALRLLRPFWRLVLLSTLMGTLGGIATALLLAVINRALRGEGDMVSFAWAFGGLCLAAL LGQGAAGLGSAIVGQKVVVAVRRELVAHILTAPIARLERLRVHRLMATLGGDVDALSGFSLVLSGLGVAVAITCGCLGYL VLLSPPLFLVTLLVLGLGVGGHARMRRLGQARFAAARAAEDDLQRHYRAITEGAKELRLNRPRRIRLFHADLEATITRIA KLRLRGLGVFLGANLFGSLALFAVIGGILLMTRAAPEAIGVEDVSGFVLVLLFMKGPMQQILGALPSLGRAQIALRRIAE LGAAGQEGGDLPGLAPGMGEGAVPMPAEITLEAVSYRFPESAAGPGFTLGPLTLTLRRGESVVITGENGCGKTTLIKLIL GLYQPTAGRVLLDGRPVRAGEWDEYRQLFSAVFADYHLFDDGMAEGRQAAEAARLLDAFDLATKTALKDGRFTTTDLSAG ERKRLALILLALEGRPIVVFDEWAAEQDPGFRHRFYHTVLPDLKRQGRTVIVVSHDEGYFDCADRRIVLKNGKLAG
Specific function: ATP-driven efflux pump necessary for the secretion of syringomycin. May specifically bind syringomycin and translocate it to the periplasmic space. SyrD is also required for full expression of the syrB gene [H]
COG id: COG4615
COG function: function code QP; ABC-type siderophore export system, fused ATPase and permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI156105685, Length=492, Percent_Identity=26.219512195122, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI73747915, Length=530, Percent_Identity=24.9056603773585, Blast_Score=92, Evalue=9e-19, Organism=Homo sapiens, GI255708477, Length=581, Percent_Identity=23.407917383821, Blast_Score=87, Evalue=6e-17, Organism=Homo sapiens, GI148612844, Length=581, Percent_Identity=23.407917383821, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI4505771, Length=237, Percent_Identity=27.0042194092827, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI9961252, Length=237, Percent_Identity=27.0042194092827, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI73747917, Length=478, Percent_Identity=24.4769874476987, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI42741659, Length=238, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI150417984, Length=239, Percent_Identity=29.7071129707113, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI9961250, Length=244, Percent_Identity=26.2295081967213, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI21536376, Length=197, Percent_Identity=27.9187817258883, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI45446740, Length=233, Percent_Identity=24.8927038626609, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI47078218, Length=233, Percent_Identity=24.8927038626609, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI105990541, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI9665248, Length=220, Percent_Identity=25, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1788540, Length=486, Percent_Identity=33.7448559670782, Blast_Score=255, Evalue=7e-69, Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=32.2869955156951, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1786698, Length=200, Percent_Identity=31, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1787143, Length=495, Percent_Identity=20.2020202020202, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1786654, Length=475, Percent_Identity=22.9473684210526, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI87081791, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1786653, Length=470, Percent_Identity=23.6170212765957, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1787547, Length=208, Percent_Identity=27.8846153846154, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787112, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI87081709, Length=219, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=26.1061946902655, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1787105, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1787758, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI48994943, Length=227, Percent_Identity=28.6343612334802, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=28.6324786324786, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788225, Length=208, Percent_Identity=29.3269230769231, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533592, Length=495, Percent_Identity=26.4646464646465, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193202349, Length=503, Percent_Identity=25.2485089463221, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17558664, Length=300, Percent_Identity=27.3333333333333, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17567265, Length=230, Percent_Identity=25.2173913043478, Blast_Score=79, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17511077, Length=489, Percent_Identity=22.2903885480573, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115534520, Length=500, Percent_Identity=23.8, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193209708, Length=199, Percent_Identity=32.1608040201005, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992290, Length=348, Percent_Identity=22.9885057471264, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17533971, Length=490, Percent_Identity=22.0408163265306, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17551702, Length=512, Percent_Identity=23.046875, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17551700, Length=512, Percent_Identity=23.046875, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996550, Length=240, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17541710, Length=229, Percent_Identity=25.764192139738, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=220, Percent_Identity=25.4545454545455, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115535101, Length=221, Percent_Identity=25.7918552036199, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17543740, Length=311, Percent_Identity=23.7942122186495, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569143, Length=247, Percent_Identity=24.6963562753036, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71984940, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510237, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=228, Percent_Identity=26.7543859649123, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641565, Length=493, Percent_Identity=25.3549695740365, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI281363262, Length=328, Percent_Identity=26.8292682926829, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24653245, Length=328, Percent_Identity=26.8292682926829, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI45551502, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI45551501, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI21357851, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24659289, Length=225, Percent_Identity=28.4444444444444, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136662, Length=448, Percent_Identity=24.5535714285714, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI221474134, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017940 - InterPro: IPR001140 - InterPro: IPR011527 - InterPro: IPR003593 - InterPro: IPR005898 [H]
Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 59072; Mature: 58941
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPGTAPAPASSSAAAASPLALALRLLRPFWRLVLLSTLMGTLGGIATALLLAVINRAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGEGDMVSFAWAFGGLCLAALLGQGAAGLGSAIVGQKVVVAVRRELVAHILTAPIARLER CCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRVHRLMATLGGDVDALSGFSLVLSGLGVAVAITCGCLGYLVLLSPPLFLVTLLVLGLGV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC GGHARMRRLGQARFAAARAAEDDLQRHYRAITEGAKELRLNRPRRIRLFHADLEATITRI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH AKLRLRGLGVFLGANLFGSLALFAVIGGILLMTRAAPEAIGVEDVSGFVLVLLFMKGPMQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHH QILGALPSLGRAQIALRRIAELGAAGQEGGDLPGLAPGMGEGAVPMPAEITLEAVSYRFP HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC ESAAGPGFTLGPLTLTLRRGESVVITGENGCGKTTLIKLILGLYQPTAGRVLLDGRPVRA CCCCCCCCEECCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC GEWDEYRQLFSAVFADYHLFDDGMAEGRQAAEAARLLDAFDLATKTALKDGRFTTTDLSA CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC GERKRLALILLALEGRPIVVFDEWAAEQDPGFRHRFYHTVLPDLKRQGRTVIVVSHDEGY CCHHCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC FDCADRRIVLKNGKLAG EECCCCEEEEECCCCCC >Mature Secondary Structure TAPGTAPAPASSSAAAASPLALALRLLRPFWRLVLLSTLMGTLGGIATALLLAVINRAL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGEGDMVSFAWAFGGLCLAALLGQGAAGLGSAIVGQKVVVAVRRELVAHILTAPIARLER CCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRVHRLMATLGGDVDALSGFSLVLSGLGVAVAITCGCLGYLVLLSPPLFLVTLLVLGLGV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC GGHARMRRLGQARFAAARAAEDDLQRHYRAITEGAKELRLNRPRRIRLFHADLEATITRI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH AKLRLRGLGVFLGANLFGSLALFAVIGGILLMTRAAPEAIGVEDVSGFVLVLLFMKGPMQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHH QILGALPSLGRAQIALRRIAELGAAGQEGGDLPGLAPGMGEGAVPMPAEITLEAVSYRFP HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC ESAAGPGFTLGPLTLTLRRGESVVITGENGCGKTTLIKLILGLYQPTAGRVLLDGRPVRA CCCCCCCCEECCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC GEWDEYRQLFSAVFADYHLFDDGMAEGRQAAEAARLLDAFDLATKTALKDGRFTTTDLSA CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC GERKRLALILLALEGRPIVVFDEWAAEQDPGFRHRFYHTVLPDLKRQGRTVIVVSHDEGY CCHHCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC FDCADRRIVLKNGKLAG EECCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8231810 [H]