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The map label for this gene is ybhD [H]

Identifier: 83592802

GI number: 83592802

Start: 1732186

End: 1733130

Strand: Direct

Name: ybhD [H]

Synonym: Rru_A1466

Alternate gene names: 83592802

Gene position: 1732186-1733130 (Clockwise)

Preceding gene: 83592798

Following gene: 83592812

Centisome position: 39.79

GC content: 65.93

Gene sequence:

>945_bases
GTGGTTCCGAGTTTCCGGCAAATCCGCGCCTTCCTCGCCGTCGCCCGGCATCTGAAGTTCACCCGGGCGGCCGAGGAGTT
GAACGTCTCGCAGCCGACCCTGACCGTGCAGATCAACCAGATGGAAGAGGCCCTGTCGGTCAAGCTGTTCGACCGCAACA
AGCGTCAGGTCTCGCTGACGCCGGCGGGGCGCAACCTGATCCCGCTGCTTGAACGGGTTTTGGCCGATATGGACGAGGTG
ATGCTGGCCAGCAGCGATCTGGCGCTCGCCCGCCGGGGAACGGTGCGGGTCGCCGCTCTGCCCTCGGTCTCCGCCCGCCT
GTTGCCCGTCGCCATGGTCCGCTTCAAGAAAAGCCATCCCGGCATCGTCGTGCGGGTGCGCGATGTGGTCGGCGAGGACA
TCGTCGCCCTGGTCAAGGCCGAAGAGGTGGATTTCGGCGTGGGAATCCGCCTGACCCCCGACCGCGACATCAAGGTCGAG
GATTTCGTCTCGGATTCGATCTGCGCCTTCTTTCCCAATGGTCATCCTTTGGAAACGGGCCCCAGCATTCTGACCATGGC
CGATTGCGTGGCCTATCCGTTGATCCTGACCGGACGCAACAGTAGTGTTCGCGTTTTGTTCGAGCGATCGATGGCGCGCG
AGGGGGTGGAGGTGCAGGTGGCGGCCGAAGCCAACTACATGTCGACGGCCCTGGGCATGGTGCGGGCCGGCCTGGGGGTG
GCGGTGCTTCCCGCCTCGGCGGTCGATTCCGGCAATGCCATCGGCCTCGGCTTCAAGGTCATCGATGCCCCCTGGCTCAG
CCGCCGGGTGGGTATCGTGCGCAAATCCGGTCGCTCGCTGCCCCCCGTCGCCGAGTTGTTCATCGATGCCCTGCACGAGG
TGGCCGCCGGCCGCCCCGATGCCAATTTCACCTCTGCCCGCCGGCCGGAAACCCGCCGGGGGTAA

Upstream 100 bases:

>100_bases
GGACTCGATCATCGCGGACAGCGGGGGGGCGGGCCGGGTATGATGGGGGCGATCGGTTAGGCCCGATCCCGCCGTTCCCG
CCCCGTCAAGGACGCTTCCC

Downstream 100 bases:

>100_bases
GGCGTTCGGGCGCTGTCTCCCCGCGCCGGGAGAGGGCTTATTTAGAGCGGTGAGCGTGATATCTGGTCTCCGCTCACCGC
TCCAAGGTCTTGATCGTCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MVPSFRQIRAFLAVARHLKFTRAAEELNVSQPTLTVQINQMEEALSVKLFDRNKRQVSLTPAGRNLIPLLERVLADMDEV
MLASSDLALARRGTVRVAALPSVSARLLPVAMVRFKKSHPGIVVRVRDVVGEDIVALVKAEEVDFGVGIRLTPDRDIKVE
DFVSDSICAFFPNGHPLETGPSILTMADCVAYPLILTGRNSSVRVLFERSMAREGVEVQVAAEANYMSTALGMVRAGLGV
AVLPASAVDSGNAIGLGFKVIDAPWLSRRVGIVRKSGRSLPPVAELFIDALHEVAAGRPDANFTSARRPETRRG

Sequences:

>Translated_314_residues
MVPSFRQIRAFLAVARHLKFTRAAEELNVSQPTLTVQINQMEEALSVKLFDRNKRQVSLTPAGRNLIPLLERVLADMDEV
MLASSDLALARRGTVRVAALPSVSARLLPVAMVRFKKSHPGIVVRVRDVVGEDIVALVKAEEVDFGVGIRLTPDRDIKVE
DFVSDSICAFFPNGHPLETGPSILTMADCVAYPLILTGRNSSVRVLFERSMAREGVEVQVAAEANYMSTALGMVRAGLGV
AVLPASAVDSGNAIGLGFKVIDAPWLSRRVGIVRKSGRSLPPVAELFIDALHEVAAGRPDANFTSARRPETRRG
>Mature_314_residues
MVPSFRQIRAFLAVARHLKFTRAAEELNVSQPTLTVQINQMEEALSVKLFDRNKRQVSLTPAGRNLIPLLERVLADMDEV
MLASSDLALARRGTVRVAALPSVSARLLPVAMVRFKKSHPGIVVRVRDVVGEDIVALVKAEEVDFGVGIRLTPDRDIKVE
DFVSDSICAFFPNGHPLETGPSILTMADCVAYPLILTGRNSSVRVLFERSMAREGVEVQVAAEANYMSTALGMVRAGLGV
AVLPASAVDSGNAIGLGFKVIDAPWLSRRVGIVRKSGRSLPPVAELFIDALHEVAAGRPDANFTSARRPETRRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=306, Percent_Identity=29.7385620915033, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1788748, Length=299, Percent_Identity=29.7658862876254, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=28.6219081272085, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=27.6, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=27.8225806451613, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=29.1005291005291, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788887, Length=245, Percent_Identity=25.7142857142857, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI2367136, Length=258, Percent_Identity=27.906976744186, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=25.4125412541254, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=28.4046692607004, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=216, Percent_Identity=24.537037037037, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787589, Length=153, Percent_Identity=35.9477124183007, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=23.6, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=134, Percent_Identity=32.8358208955224, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=23.7903225806452, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082132, Length=286, Percent_Identity=23.7762237762238, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=23.4567901234568, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34056; Mature: 34056

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPSFRQIRAFLAVARHLKFTRAAEELNVSQPTLTVQINQMEEALSVKLFDRNKRQVSLT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHEEEEEECCCCEEEEC
PAGRNLIPLLERVLADMDEVMLASSDLALARRGTVRVAALPSVSARLLPVAMVRFKKSHP
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
GIVVRVRDVVGEDIVALVKAEEVDFGVGIRLTPDRDIKVEDFVSDSICAFFPNGHPLETG
CEEEEEHHHCCCHHEEHEECCCCCCCCEEEECCCCCCCHHHHCCCCEEEECCCCCCCCCC
PSILTMADCVAYPLILTGRNSSVRVLFERSMAREGVEVQVAAEANYMSTALGMVRAGLGV
CCHHHHHHHHHCCEEEECCCCCEEEEEEHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCE
AVLPASAVDSGNAIGLGFKVIDAPWLSRRVGIVRKSGRSLPPVAELFIDALHEVAAGRPD
EEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
ANFTSARRPETRRG
CCCCCCCCCCCCCC
>Mature Secondary Structure
MVPSFRQIRAFLAVARHLKFTRAAEELNVSQPTLTVQINQMEEALSVKLFDRNKRQVSLT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHEEEEEECCCCEEEEC
PAGRNLIPLLERVLADMDEVMLASSDLALARRGTVRVAALPSVSARLLPVAMVRFKKSHP
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
GIVVRVRDVVGEDIVALVKAEEVDFGVGIRLTPDRDIKVEDFVSDSICAFFPNGHPLETG
CEEEEEHHHCCCHHEEHEECCCCCCCCEEEECCCCCCCHHHHCCCCEEEECCCCCCCCCC
PSILTMADCVAYPLILTGRNSSVRVLFERSMAREGVEVQVAAEANYMSTALGMVRAGLGV
CCHHHHHHHHHCCEEEECCCCCEEEEEEHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCE
AVLPASAVDSGNAIGLGFKVIDAPWLSRRVGIVRKSGRSLPPVAELFIDALHEVAAGRPD
EEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
ANFTSARRPETRRG
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]