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The map label for this gene is lsrR [H]

Identifier: 83592702

GI number: 83592702

Start: 1607694

End: 1608662

Strand: Reverse

Name: lsrR [H]

Synonym: Rru_A1366

Alternate gene names: 83592702

Gene position: 1608662-1607694 (Counterclockwise)

Preceding gene: 83592703

Following gene: 83592701

Centisome position: 36.96

GC content: 66.25

Gene sequence:

>969_bases
ATGGCAGCCGATGACGCGGACGGTCTTTCCTCCGACAGTGATACCCAGCACCTCAATACCCGGGTCGCCTGGTACTATTA
CATCGGCAGCATGACCCAGCAGGAGATCGCCGACCGCCTGGGGCTGACCCGCCTGCGGGTCAACAAGATCATCGGACAGG
CCCGGGCCGACGGCTCGGTGCAGATCGAGATCAATATGCCGCTGGCCTCCTGCGTCGCCCTCGAGGAATCGCTCAAAAGC
CGCTATGGACTGGTCGATGTCGTCGTCGTCCCCTCGGTCAAAGACGAGGAGGTGCAAAAACGCGTGATCGGCGAAGCCGC
CGGCCTGATGTTGGGCGGCCTGCTGCGCGATGGCCAGATCATCGGCGTCGGCTGGGGCGGCACCCTGGTCGCCTCGGTCA
AACGCCTCACCCAGCGCCGCCACCCGCGCTCGCGCGTCGTTTCGCTGATGGGCGGGCTGACCCGGGGATCGGCGGCCAAT
ACCTTCGAGGTCGCCACCGACCTCGCCCGCGTTCTCGGGGCGGAATGCCATTACATCCCCTCGCCGCTTTATTATCCAAA
CGACGAAAGCTTCGCCAGCCTGCTTGGCCACCGCCCCTTGGCCGAGGTAATGGCCGAGGCGCGGCGCGCCGATGTCGCCC
TTGTCGCCTGCGGCGACCTGTCGGGGCGCTCGCAGTTGTTCTCGGCCGTCTCCCTCGAATCCCGCCAGATCGCCGACCTC
AAGGCCCTGGGCACCGTCGGCGAAGTGCTGGGCACCTTCCTCGATGCCGAGGGAGTCCCCGTCGATCATCCGCTGAATTC
CCGGGTCATGGCCCTCCATCCGGCCGACCTCAAGGCGGTCAAGGCCACCATCCTGGCCTCGGGCGACACCTATAAACTGC
CGGTTATCCGCGCCATTCTGCGGGGCGGCTACATCAATCGGCTGGTCACCGACGAAGCCGTCGCCGAGGCCCTGTTGCGC
GGCGCTTAA

Upstream 100 bases:

>100_bases
AGGCCATGCGGGCGCGCCACACCAACCTGGAGTAGACCGCACGGGGCCAAGCCGGGTAGAACCGGCGTCCTCTGGCGATG
CAACAACATGGAATACCCTG

Downstream 100 bases:

>100_bases
GACCAACTATAATGGTCGGACATACCTTTGACTTTCCGGTCGAATACAGTTGAAACACCGATATGACAACTGTATAAGGG
AACGATCAGGCCGGTTGGAA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MAADDADGLSSDSDTQHLNTRVAWYYYIGSMTQQEIADRLGLTRLRVNKIIGQARADGSVQIEINMPLASCVALEESLKS
RYGLVDVVVVPSVKDEEVQKRVIGEAAGLMLGGLLRDGQIIGVGWGGTLVASVKRLTQRRHPRSRVVSLMGGLTRGSAAN
TFEVATDLARVLGAECHYIPSPLYYPNDESFASLLGHRPLAEVMAEARRADVALVACGDLSGRSQLFSAVSLESRQIADL
KALGTVGEVLGTFLDAEGVPVDHPLNSRVMALHPADLKAVKATILASGDTYKLPVIRAILRGGYINRLVTDEAVAEALLR
GA

Sequences:

>Translated_322_residues
MAADDADGLSSDSDTQHLNTRVAWYYYIGSMTQQEIADRLGLTRLRVNKIIGQARADGSVQIEINMPLASCVALEESLKS
RYGLVDVVVVPSVKDEEVQKRVIGEAAGLMLGGLLRDGQIIGVGWGGTLVASVKRLTQRRHPRSRVVSLMGGLTRGSAAN
TFEVATDLARVLGAECHYIPSPLYYPNDESFASLLGHRPLAEVMAEARRADVALVACGDLSGRSQLFSAVSLESRQIADL
KALGTVGEVLGTFLDAEGVPVDHPLNSRVMALHPADLKAVKATILASGDTYKLPVIRAILRGGYINRLVTDEAVAEALLR
GA
>Mature_321_residues
AADDADGLSSDSDTQHLNTRVAWYYYIGSMTQQEIADRLGLTRLRVNKIIGQARADGSVQIEINMPLASCVALEESLKSR
YGLVDVVVVPSVKDEEVQKRVIGEAAGLMLGGLLRDGQIIGVGWGGTLVASVKRLTQRRHPRSRVVSLMGGLTRGSAANT
FEVATDLARVLGAECHYIPSPLYYPNDESFASLLGHRPLAEVMAEARRADVALVACGDLSGRSQLFSAVSLESRQIADLK
ALGTVGEVLGTFLDAEGVPVDHPLNSRVMALHPADLKAVKATILASGDTYKLPVIRAILRGGYINRLVTDEAVAEALLRG
A

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=309, Percent_Identity=33.0097087378641, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87082414, Length=307, Percent_Identity=24.4299674267101, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34429; Mature: 34298

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADDADGLSSDSDTQHLNTRVAWYYYIGSMTQQEIADRLGLTRLRVNKIIGQARADGSV
CCCCCCCCCCCCCCCHHHHHEEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHCCCCEE
QIEINMPLASCVALEESLKSRYGLVDVVVVPSVKDEEVQKRVIGEAAGLMLGGLLRDGQI
EEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
IGVGWGGTLVASVKRLTQRRHPRSRVVSLMGGLTRGSAANTFEVATDLARVLGAECHYIP
EEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
SPLYYPNDESFASLLGHRPLAEVMAEARRADVALVACGDLSGRSQLFSAVSLESRQIADL
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCHHHHHH
KALGTVGEVLGTFLDAEGVPVDHPLNSRVMALHPADLKAVKATILASGDTYKLPVIRAIL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHEEECCCCEEHHHHHHHH
RGGYINRLVTDEAVAEALLRGA
HCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AADDADGLSSDSDTQHLNTRVAWYYYIGSMTQQEIADRLGLTRLRVNKIIGQARADGSV
CCCCCCCCCCCCCCHHHHHEEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHCCCCEE
QIEINMPLASCVALEESLKSRYGLVDVVVVPSVKDEEVQKRVIGEAAGLMLGGLLRDGQI
EEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
IGVGWGGTLVASVKRLTQRRHPRSRVVSLMGGLTRGSAANTFEVATDLARVLGAECHYIP
EEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
SPLYYPNDESFASLLGHRPLAEVMAEARRADVALVACGDLSGRSQLFSAVSLESRQIADL
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCHHHHHH
KALGTVGEVLGTFLDAEGVPVDHPLNSRVMALHPADLKAVKATILASGDTYKLPVIRAIL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHEEECCCCEEHHHHHHHH
RGGYINRLVTDEAVAEALLRGA
HCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA