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The map label for this gene is rbsC [H]

Identifier: 83592699

GI number: 83592699

Start: 1603781

End: 1604779

Strand: Reverse

Name: rbsC [H]

Synonym: Rru_A1363

Alternate gene names: 83592699

Gene position: 1604779-1603781 (Counterclockwise)

Preceding gene: 83592700

Following gene: 83592698

Centisome position: 36.87

GC content: 65.57

Gene sequence:

>999_bases
ATGTCCTCTAACACCCTTGCCCAACCGGCGGTGCCCACCGCTCCCGGCCTGCTCGCCCGGCTGACCTCGGTGCCGCTGGC
CGGCGTCCTCACCGCCCTGGTTCTGATCTTCGGCGTCTCCTGCCTGCTGTCGGAACATTTCCTGACCGCCTACAACATGA
CGATCATGGCCCGCACCCTGGCCTTCGTCGGGCTGATCACCATCGGCCAGTCGATGCTGCTGTTGCTGGGCGAGCTTGAT
CTGTCGCTGGGCGCCATCGCCGGGCTCTGCGGCGTGGTCGGCGGTATCCTCATGGTCCAATACGGCCTTGATCCCTGGCT
GTCGCTGGCGCTCTGTCTGGCGCTTGGCCTCACCTGCGGGGTGATCAACGGCCTTTTGGTGACCATGGTGCGCCTGCATT
CCCTGGTGCTGACCATCGGCACGGCGGGCATCTATGGCGGGGCCAATCTGGTGGCGACCAAGGGCGTGGCCATCACCGGC
ATTCCCAGCGAAATCTCGTTCCTGGGCAAGGCCGCCCCCTATGGCCTGCCGGTGCCCTTCCTCATCATGGTGACGATCCT
GGTGATCGTTTCCTTCGTCATCTTCAAAACGCCGTTTGGCCGCTACATCTACGCCATCGGCAATAACATGGCGGCGGCCC
GCATGCTCGGCATCCGCACCAACGCCATCCGGGTCTGCGTCTTCGCCCTGGCCGGTTTCCTGTCGGCCCTGGCCGGCATG
TTGATGGTCGCCCGCCTGGGCACCGCCCAGCCGTCGATCGGCGAGGGCTGGGTTCTGGCGCCGATCGCCGCCTCGGTCAT
CGGTGGCGTCGCCACCACCGGCGGCATCGGCAGTCCGATCGGCGCCATCTTCGGCGCGGCGATCATCGGCATCATCGACA
ATATCATCGTGCTTTTCGGGGTCTCGCCCTATTGGCAGTCGGTGGTCAGCGGCACGATCGTCGTCCTTGCCATCTCGTTC
GATGCCGTCTCGCGGCGCTGGCTGCGCCGGGAAGACTAA

Upstream 100 bases:

>100_bases
CACACCCTTGTCGGCGCCATCATCGGCTCGGCCCAAAGCGGCCAGCCCCCTGCGGGCGCCCCCTCCCCCGTCGCCGACCT
CGAGACAGGAGCACGCTGTC

Downstream 100 bases:

>100_bases
CCTCCCACGCCGTTCCCCCCCGCCGCCCGAGGCGGACTTAAGTCTCCTCCTGACAAGGGACAAGGGCCATGAAGCTTGGT
GTCAATCTGTGCTTCGCCGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSSNTLAQPAVPTAPGLLARLTSVPLAGVLTALVLIFGVSCLLSEHFLTAYNMTIMARTLAFVGLITIGQSMLLLLGELD
LSLGAIAGLCGVVGGILMVQYGLDPWLSLALCLALGLTCGVINGLLVTMVRLHSLVLTIGTAGIYGGANLVATKGVAITG
IPSEISFLGKAAPYGLPVPFLIMVTILVIVSFVIFKTPFGRYIYAIGNNMAAARMLGIRTNAIRVCVFALAGFLSALAGM
LMVARLGTAQPSIGEGWVLAPIAASVIGGVATTGGIGSPIGAIFGAAIIGIIDNIIVLFGVSPYWQSVVSGTIVVLAISF
DAVSRRWLRRED

Sequences:

>Translated_332_residues
MSSNTLAQPAVPTAPGLLARLTSVPLAGVLTALVLIFGVSCLLSEHFLTAYNMTIMARTLAFVGLITIGQSMLLLLGELD
LSLGAIAGLCGVVGGILMVQYGLDPWLSLALCLALGLTCGVINGLLVTMVRLHSLVLTIGTAGIYGGANLVATKGVAITG
IPSEISFLGKAAPYGLPVPFLIMVTILVIVSFVIFKTPFGRYIYAIGNNMAAARMLGIRTNAIRVCVFALAGFLSALAGM
LMVARLGTAQPSIGEGWVLAPIAASVIGGVATTGGIGSPIGAIFGAAIIGIIDNIIVLFGVSPYWQSVVSGTIVVLAISF
DAVSRRWLRRED
>Mature_331_residues
SSNTLAQPAVPTAPGLLARLTSVPLAGVLTALVLIFGVSCLLSEHFLTAYNMTIMARTLAFVGLITIGQSMLLLLGELDL
SLGAIAGLCGVVGGILMVQYGLDPWLSLALCLALGLTCGVINGLLVTMVRLHSLVLTIGTAGIYGGANLVATKGVAITGI
PSEISFLGKAAPYGLPVPFLIMVTILVIVSFVIFKTPFGRYIYAIGNNMAAARMLGIRTNAIRVCVFALAGFLSALAGML
MVARLGTAQPSIGEGWVLAPIAASVIGGVATTGGIGSPIGAIFGAAIIGIIDNIIVLFGVSPYWQSVVSGTIVVLAISFD
AVSRRWLRRED

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=300, Percent_Identity=33, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1787793, Length=297, Percent_Identity=34.006734006734, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI145693152, Length=330, Percent_Identity=30.9090909090909, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790524, Length=294, Percent_Identity=34.3537414965986, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788896, Length=292, Percent_Identity=31.5068493150685, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=42.962962962963, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=30.7142857142857, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787794, Length=281, Percent_Identity=29.5373665480427, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788471, Length=288, Percent_Identity=31.5972222222222, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693214, Length=265, Percent_Identity=29.0566037735849, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34172; Mature: 34040

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNTLAQPAVPTAPGLLARLTSVPLAGVLTALVLIFGVSCLLSEHFLTAYNMTIMARTL
CCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFVGLITIGQSMLLLLGELDLSLGAIAGLCGVVGGILMVQYGLDPWLSLALCLALGLTCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VINGLLVTMVRLHSLVLTIGTAGIYGGANLVATKGVAITGIPSEISFLGKAAPYGLPVPF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEECCCHHHHHHHCCCCCCCCHHH
LIMVTILVIVSFVIFKTPFGRYIYAIGNNMAAARMLGIRTNAIRVCVFALAGFLSALAGM
HHHHHHHHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMVARLGTAQPSIGEGWVLAPIAASVIGGVATTGGIGSPIGAIFGAAIIGIIDNIIVLFG
HHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
VSPYWQSVVSGTIVVLAISFDAVSRRWLRRED
CCHHHHHHHCCEEEEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure 
SSNTLAQPAVPTAPGLLARLTSVPLAGVLTALVLIFGVSCLLSEHFLTAYNMTIMARTL
CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCHHHHHHHCCEEEEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]