| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is lolD [H]
Identifier: 83592627
GI number: 83592627
Start: 1524398
End: 1525063
Strand: Direct
Name: lolD [H]
Synonym: Rru_A1291
Alternate gene names: 83592627
Gene position: 1524398-1525063 (Clockwise)
Preceding gene: 83592626
Following gene: 83592628
Centisome position: 35.02
GC content: 69.67
Gene sequence:
>666_bases ATGCCGCTGCTGACCATCCGTGATCTTGACGTGCGCTTTCCCGGCCTGGGCCGACCGGCGCTTTTCCTGCCCGCCCTGAC CCTGGAGGCCGGGCAGGCCCTGGTCGTCACCGGCCCCTCGGGATCGGGCAAGACCACCTTTCTCAATCGCATCACCGGGC TGGAAGCGTCCGCCGCCGGCGCCATCACCTGGCAGGGCACCGATCTGGGCGCCCTGTCGGAAGGGGCGCGCGACCGCTGG CGGGCCCGCACCATCGGGCTGGTGATGCAGGAGTTTCACCTGTTCCCCGGGCTCTCGGCGCTTGAAAACGTCGTCCTGCC CCAGCGGCTTGCCCATTTTCGCCTGCCACCCGCCGTTCTGGCCGAGGCCGAAGGCCTGCTTGCCCGGGTGGGGATCGAGC GGCCGGATCAACGAATCGAGACCCTGTCGCGCGGCCAGATGCAGCGGGTGGCGGTCGCCCGCGCCCTAGTCGGACGGCCC GGCGTCATCGTCGCCGACGAACCGACGGCCAGTCTTGATGACGAGGCCGGGACGGCGGTGGCCGATCTGCTGGTCAATCT GGCCAAGGATGCCGGGGCCAGTTTGATCGTCGCCAGCCACGACCCGGTGTTCTTCGCCCGCATTCCCCGTTTGCTCCGGC TTGAAGCCGGGCGTCAGAGGGCCTGA
Upstream 100 bases:
>100_bases AGGTGACCGGGCGGCTTGACGTCGGCTCGTGGACCGATCCCGAGACCGGCTTTGTCAGCCTGCTGCGGCTGACCGGCGCC TCCTTTCGCAAGGTTTGATC
Downstream 100 bases:
>100_bases CATGCTGCGCTTCGTCTTCGCCGATCTCGCCACCCGCCGCTGGGGCGCCGCCGCCCTGGTGGTGATCATCGCCTTGGCCA CCGGCCTTGGCGTCATGGTG
Product: ABC transporter protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MPLLTIRDLDVRFPGLGRPALFLPALTLEAGQALVVTGPSGSGKTTFLNRITGLEASAAGAITWQGTDLGALSEGARDRW RARTIGLVMQEFHLFPGLSALENVVLPQRLAHFRLPPAVLAEAEGLLARVGIERPDQRIETLSRGQMQRVAVARALVGRP GVIVADEPTASLDDEAGTAVADLLVNLAKDAGASLIVASHDPVFFARIPRLLRLEAGRQRA
Sequences:
>Translated_221_residues MPLLTIRDLDVRFPGLGRPALFLPALTLEAGQALVVTGPSGSGKTTFLNRITGLEASAAGAITWQGTDLGALSEGARDRW RARTIGLVMQEFHLFPGLSALENVVLPQRLAHFRLPPAVLAEAEGLLARVGIERPDQRIETLSRGQMQRVAVARALVGRP GVIVADEPTASLDDEAGTAVADLLVNLAKDAGASLIVASHDPVFFARIPRLLRLEAGRQRA >Mature_220_residues PLLTIRDLDVRFPGLGRPALFLPALTLEAGQALVVTGPSGSGKTTFLNRITGLEASAAGAITWQGTDLGALSEGARDRWR ARTIGLVMQEFHLFPGLSALENVVLPQRLAHFRLPPAVLAEAEGLLARVGIERPDQRIETLSRGQMQRVAVARALVGRPG VIVADEPTASLDDEAGTAVADLLVNLAKDAGASLIVASHDPVFFARIPRLLRLEAGRQRA
Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=28.3582089552239, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=31.3432835820896, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI46592964, Length=181, Percent_Identity=30.939226519337, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI46592898, Length=181, Percent_Identity=30.939226519337, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI46592915, Length=181, Percent_Identity=30.939226519337, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI46592956, Length=181, Percent_Identity=30.939226519337, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI46592971, Length=181, Percent_Identity=30.939226519337, Blast_Score=68, Evalue=5e-12, Organism=Homo sapiens, GI46592978, Length=181, Percent_Identity=30.939226519337, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI156105685, Length=186, Percent_Identity=32.7956989247312, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI171184400, Length=189, Percent_Identity=32.8042328042328, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1786703, Length=196, Percent_Identity=41.3265306122449, Blast_Score=133, Evalue=7e-33, Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=34.3589743589744, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1787105, Length=219, Percent_Identity=34.2465753424658, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1787029, Length=199, Percent_Identity=37.1859296482412, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1786872, Length=185, Percent_Identity=36.7567567567568, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789672, Length=188, Percent_Identity=37.2340425531915, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788225, Length=209, Percent_Identity=33.4928229665072, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1790544, Length=215, Percent_Identity=35.3488372093023, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786563, Length=187, Percent_Identity=37.4331550802139, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1786398, Length=190, Percent_Identity=33.6842105263158, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=203, Percent_Identity=33.9901477832512, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=33.1730769230769, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI87081709, Length=178, Percent_Identity=37.0786516853933, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787500, Length=217, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1788761, Length=185, Percent_Identity=35.6756756756757, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI87081791, Length=202, Percent_Identity=31.1881188118812, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787370, Length=180, Percent_Identity=34.4444444444444, Blast_Score=86, Evalue=1e-18, Organism=Escherichia coli, GI1789962, Length=212, Percent_Identity=31.6037735849057, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790190, Length=203, Percent_Identity=30.5418719211823, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787712, Length=180, Percent_Identity=35.5555555555556, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1787164, Length=194, Percent_Identity=35.0515463917526, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789891, Length=199, Percent_Identity=31.6582914572864, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789991, Length=206, Percent_Identity=31.0679611650485, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=31.1320754716981, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789032, Length=182, Percent_Identity=31.3186813186813, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI145693107, Length=221, Percent_Identity=33.0316742081448, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=32.994923857868, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI48994883, Length=228, Percent_Identity=29.8245614035088, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786319, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=2e-15, Organism=Escherichia coli, GI1790534, Length=198, Percent_Identity=34.3434343434343, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786253, Length=185, Percent_Identity=30.2702702702703, Blast_Score=74, Evalue=5e-15, Organism=Escherichia coli, GI87082267, Length=197, Percent_Identity=31.4720812182741, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI48994997, Length=228, Percent_Identity=32.4561403508772, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1789864, Length=217, Percent_Identity=27.6497695852535, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788897, Length=201, Percent_Identity=32.3383084577114, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788210, Length=181, Percent_Identity=32.0441988950276, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1786698, Length=180, Percent_Identity=26.1111111111111, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI48995001, Length=201, Percent_Identity=31.3432835820896, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788644, Length=205, Percent_Identity=34.6341463414634, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1787112, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789963, Length=222, Percent_Identity=27.4774774774775, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788450, Length=181, Percent_Identity=30.3867403314917, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788165, Length=183, Percent_Identity=32.2404371584699, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787143, Length=201, Percent_Identity=30.8457711442786, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788506, Length=190, Percent_Identity=32.6315789473684, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=27.3148148148148, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787759, Length=220, Percent_Identity=30.4545454545455, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1790525, Length=211, Percent_Identity=25.1184834123223, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87081782, Length=177, Percent_Identity=31.0734463276836, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1789593, Length=207, Percent_Identity=29.951690821256, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789586, Length=194, Percent_Identity=31.4432989690722, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115534520, Length=198, Percent_Identity=31.8181818181818, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71984940, Length=222, Percent_Identity=29.2792792792793, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=29.5964125560538, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193208177, Length=205, Percent_Identity=31.7073170731707, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71992290, Length=221, Percent_Identity=27.6018099547511, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541710, Length=202, Percent_Identity=32.6732673267327, Blast_Score=70, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193211017, Length=205, Percent_Identity=33.1707317073171, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=205, Percent_Identity=33.1707317073171, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996809, Length=205, Percent_Identity=33.1707317073171, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567269, Length=210, Percent_Identity=30.4761904761905, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558664, Length=204, Percent_Identity=32.843137254902, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567265, Length=182, Percent_Identity=31.3186813186813, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17543740, Length=183, Percent_Identity=30.0546448087432, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115535101, Length=160, Percent_Identity=36.25, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565938, Length=198, Percent_Identity=28.2828282828283, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574533, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI85726357, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24666092, Length=172, Percent_Identity=29.6511627906977, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45552199, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581407, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI23397593, Length=192, Percent_Identity=31.7708333333333, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015854 - InterPro: IPR003593 - InterPro: IPR011924 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23516; Mature: 23384
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLTIRDLDVRFPGLGRPALFLPALTLEAGQALVVTGPSGSGKTTFLNRITGLEASAAG CCEEEEECCCCCCCCCCCCHHHHHHEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCC AITWQGTDLGALSEGARDRWRARTIGLVMQEFHLFPGLSALENVVLPQRLAHFRLPPAVL EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHH AEAEGLLARVGIERPDQRIETLSRGQMQRVAVARALVGRPGVIVADEPTASLDDEAGTAV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH ADLLVNLAKDAGASLIVASHDPVFFARIPRLLRLEAGRQRA HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PLLTIRDLDVRFPGLGRPALFLPALTLEAGQALVVTGPSGSGKTTFLNRITGLEASAAG CEEEEECCCCCCCCCCCCHHHHHHEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCC AITWQGTDLGALSEGARDRWRARTIGLVMQEFHLFPGLSALENVVLPQRLAHFRLPPAVL EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHH AEAEGLLARVGIERPDQRIETLSRGQMQRVAVARALVGRPGVIVADEPTASLDDEAGTAV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH ADLLVNLAKDAGASLIVASHDPVFFARIPRLLRLEAGRQRA HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA