Click here to switch to the map view.

The map label for this gene is atpD

Identifier: 83592562

GI number: 83592562

Start: 1447712

End: 1449136

Strand: Direct

Name: atpD

Synonym: Rru_A1226

Alternate gene names: 83592562

Gene position: 1447712-1449136 (Clockwise)

Preceding gene: 83592561

Following gene: 83592563

Centisome position: 33.26

GC content: 64.21

Gene sequence:

>1425_bases
ATGGCCAAGAACAACCTCGGTACGATCACGCAGGTGACGGGCGCTGTCGTTGACGTGAAGTTCGAGGGTGAACTTCCGTC
GATCCTTTCCGCCCTCGAGACCGATAATCACGGGAACCGTCTGGTTCTCGAAGTGGCGCAGCATCTGGGCGAGAGCGTGG
TCCGCACCATCGCCATGGACAGCACGGAAGGTCTGGTCCGCGGCCAGCAGGTCACGTCGACCGGCGGTCCGATCACCGTT
CCGGTCGGCCCCCAGGTGCTGGGGCGCATCATGAACGTCATCGGCGAGCCCGTTGACGAGCGTGGCCCGGTGGTCACGGC
GCAGCGCTATCCGATCCACCGTCAGGCTCCGACCTTCGCCGAGCAGGCGACGGAAACCGAGATCCTCGTCACCGGCATCA
AGGTCATCGATCTGATCGCCCCCTACACCAAGGGCGGCAAGGTCGGCCTGTTCGGCGGCGCCGGCGTCGGCAAGACCGTG
CTGATCCAGGAACTGATCAACAACGTCGCCAAGGGTCACGGCGGGTATTCGGTGTTCGCCGGCGTCGGCGAGCGCACCCG
TGAGGGCAACGATCTTTATCACGAGATGATCGACGCCGGGATTATCGACCTGGAAGGCGACAAGTCGAAGGTCGCCCTAG
TTTATGGCCAGATGAACGAGCCGCCGGGTGCGCGCGCCCGCGTCGCCCTGGCCGGTCTGACCCAGGCCGAATACTTCCGC
GACGAAGAAGGCCAGGACGTGTTGTTCTTCGTCGACAACATCTTCCGCTTCACCCAGGCCGGTTCGGAAGTGTCGGCCCT
GCTCGGTCGTATCCCCTCGGCCGTGGGCTATCAGCCGACCCTGGCCACCGACATGGGCGCCCTGCAAGAGCGTATCACCT
CGACCAAGAAGGGCTCGATCACCTCGGTTCAGGCGATTTACGTGCCCGCCGACGATCTGACCGACCCGGCGCCGGCCGCC
TCCTTCGCCCACCTCGACGCGACGACGACGCTCAACCGCTCGATCGCCGAGCTGGGCATCTACCCGGCCGTCGATCCGCT
CGATTCGACCTCCCGCGCCCTTGATCCGCTGGTGGTTGGCGAAGAGCACTACAAGGTGGCCCGCGAAGTTCAGCGCGTGT
TGCAGACCTATAAGTCGCTCCAGGACATCATCGCCATCCTTGGCATGGACGAGCTGTCCGAAGAGGACCGTCTGGTCGTC
GCCCGCGCCCGCAAGATCCAGCGCTTCCTGTCCCAGCCGTTCCATGTGGCCGAAGTGTTCACCGGCTCGCCGGGCAAGCT
GGTCAGCCTCGAAGACACGATCAAGGGCTTCAAGGGTCTGGTCGAGGGCGAGTACGATCACCTGCCCGAACAGGCTTTCT
ATATGGTCGGCAACATGGCCGAAGCCATCGAGAAGGCCAAGAAGATGGCCGCCGAAGCCGCCTGA

Upstream 100 bases:

>100_bases
TATAACCGCACGCGACAGGCACAGATCACCAAGGAGCTGATCGAGATCATCTCCGGTGCCGAAGCCATCTAAGCGCGACC
GAATTTCAGGAGCTTTATTC

Downstream 100 bases:

>100_bases
TTCTCTTTCCAAGGGGCGGCCATCGGGCATCCGGGCCGCGAGGCCGCCCCTCCCGTTTTACGGTGCGCGCGTTTTTCCTG
GGGGCTCCGGTCGCTTTGCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MAKNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITV
PVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTV
LIQELINNVAKGHGGYSVFAGVGERTREGNDLYHEMIDAGIIDLEGDKSKVALVYGQMNEPPGARARVALAGLTQAEYFR
DEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKKGSITSVQAIYVPADDLTDPAPAA
SFAHLDATTTLNRSIAELGIYPAVDPLDSTSRALDPLVVGEEHYKVAREVQRVLQTYKSLQDIIAILGMDELSEEDRLVV
ARARKIQRFLSQPFHVAEVFTGSPGKLVSLEDTIKGFKGLVEGEYDHLPEQAFYMVGNMAEAIEKAKKMAAEAA

Sequences:

>Translated_474_residues
MAKNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITV
PVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTV
LIQELINNVAKGHGGYSVFAGVGERTREGNDLYHEMIDAGIIDLEGDKSKVALVYGQMNEPPGARARVALAGLTQAEYFR
DEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKKGSITSVQAIYVPADDLTDPAPAA
SFAHLDATTTLNRSIAELGIYPAVDPLDSTSRALDPLVVGEEHYKVAREVQRVLQTYKSLQDIIAILGMDELSEEDRLVV
ARARKIQRFLSQPFHVAEVFTGSPGKLVSLEDTIKGFKGLVEGEYDHLPEQAFYMVGNMAEAIEKAKKMAAEAA
>Mature_473_residues
AKNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITVP
VGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVL
IQELINNVAKGHGGYSVFAGVGERTREGNDLYHEMIDAGIIDLEGDKSKVALVYGQMNEPPGARARVALAGLTQAEYFRD
EEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKKGSITSVQAIYVPADDLTDPAPAAS
FAHLDATTTLNRSIAELGIYPAVDPLDSTSRALDPLVVGEEHYKVAREVQRVLQTYKSLQDIIAILGMDELSEEDRLVVA
RARKIQRFLSQPFHVAEVFTGSPGKLVSLEDTIKGFKGLVEGEYDHLPEQAFYMVGNMAEAIEKAKKMAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=78.5407725321888, Blast_Score=749, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=326, Percent_Identity=28.5276073619632, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19913428, Length=373, Percent_Identity=26.5415549597855, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI19913426, Length=443, Percent_Identity=25.2821670428894, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI50345984, Length=297, Percent_Identity=25.9259259259259, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI4757810, Length=297, Percent_Identity=25.9259259259259, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1790170, Length=464, Percent_Identity=71.3362068965517, Blast_Score=662, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=337, Percent_Identity=30.5637982195846, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1790172, Length=482, Percent_Identity=24.6887966804979, Blast_Score=102, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=74.7346072186836, Blast_Score=729, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=324, Percent_Identity=28.3950617283951, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.2100840336134, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=425, Percent_Identity=24, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=296, Percent_Identity=26.0135135135135, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=296, Percent_Identity=26.0135135135135, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=271, Percent_Identity=24.3542435424354, Blast_Score=76, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=75.764192139738, Blast_Score=713, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=380, Percent_Identity=25.7894736842105, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319370, Length=319, Percent_Identity=26.9592476489028, Blast_Score=87, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=252, Percent_Identity=25, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24638766, Length=468, Percent_Identity=77.3504273504274, Blast_Score=743, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=471, Percent_Identity=71.1252653927813, Blast_Score=679, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=90, Percent_Identity=68.8888888888889, Blast_Score=123, Evalue=2e-28,
Organism=Drosophila melanogaster, GI20129479, Length=324, Percent_Identity=27.1604938271605, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=28.3489096573209, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=28.3489096573209, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=28.3489096573209, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24583992, Length=327, Percent_Identity=27.5229357798165, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI281361666, Length=372, Percent_Identity=25.5376344086022, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24646341, Length=372, Percent_Identity=25.5376344086022, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17136796, Length=372, Percent_Identity=25.5376344086022, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24658560, Length=297, Percent_Identity=25.5892255892256, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_RHORT (Q2RV18)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426314.1
- HSSP:   P10719
- ProteinModelPortal:   Q2RV18
- SMR:   Q2RV18
- STRING:   Q2RV18
- GeneID:   3833724
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1226
- NMPDR:   fig|1085.1.peg.3140
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   Q2RV18
- ProtClustDB:   PRK09280
- BioCyc:   RRUB269796:RRU_A1226-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50853; Mature: 50722

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMD
CCCCCCCCHHEECCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
STEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFA
CCCHHHCCCEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHH
EQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGHGGYSVFA
HHCCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
GVGERTREGNDLYHEMIDAGIIDLEGDKSKVALVYGQMNEPPGARARVALAGLTQAEYFR
CCCCCCCCCHHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCEEEECCCHHHHHHC
DEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKKGSI
CCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCC
TSVQAIYVPADDLTDPAPAASFAHLDATTTLNRSIAELGIYPAVDPLDSTSRALDPLVVG
EEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEC
EEHYKVAREVQRVLQTYKSLQDIIAILGMDELSEEDRLVVARARKIQRFLSQPFHVAEVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEE
TGSPGKLVSLEDTIKGFKGLVEGEYDHLPEQAFYMVGNMAEAIEKAKKMAAEAA
ECCCCCEEEHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMD
CCCCCCCHHEECCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
STEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFA
CCCHHHCCCEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHH
EQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGHGGYSVFA
HHCCCCCCEEHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
GVGERTREGNDLYHEMIDAGIIDLEGDKSKVALVYGQMNEPPGARARVALAGLTQAEYFR
CCCCCCCCCHHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCEEEECCCHHHHHHC
DEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKKGSI
CCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCC
TSVQAIYVPADDLTDPAPAASFAHLDATTTLNRSIAELGIYPAVDPLDSTSRALDPLVVG
EEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEC
EEHYKVAREVQRVLQTYKSLQDIIAILGMDELSEEDRLVVARARKIQRFLSQPFHVAEVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEE
TGSPGKLVSLEDTIKGFKGLVEGEYDHLPEQAFYMVGNMAEAIEKAKKMAAEAA
ECCCCCEEEHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA