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The map label for this gene is rimM

Identifier: 83592522

GI number: 83592522

Start: 1404248

End: 1404853

Strand: Direct

Name: rimM

Synonym: Rru_A1186

Alternate gene names: 83592522

Gene position: 1404248-1404853 (Clockwise)

Preceding gene: 83592521

Following gene: 83592523

Centisome position: 32.26

GC content: 66.5

Gene sequence:

>606_bases
ATGACGGAGCGTCTGCTCGTGGGCGTGATCGTGGGATCCCATGGCGTACGGGGTCTCGTTCGGGTGAAAAGCTTCACCCA
GGACGAGATGGCCCTGTGCGACTACGGCCCGCTGTCCGACGAGACCGGGACGCGCCGCTTCGCCGTGGAAGTCCGAAATC
AGGCGAAAGGCGTTGTCATTTGCCAGATTCCGGGGGTTTCCGACCGAACCGCCGCCGACGCGCTGAAGGGGACGCGGCTG
TTTCTTGATCGCGCCGCCTTGCCCGCCGACGCGCTGGAGGAGGACGAATACTACCACGCCGATCTGATCGGACTGCCCGT
CGACCTTGTGGACGGCGGCCGGCTTGGGGTGGTGCATTCGGTTCACGACTTCGGCGCCGGCGATATGCTGGAAGTGACCC
TGGCCCAGGGGCGCCGCTCGGTTTTGCTGCCTTTCACCAAGGCGGTGGTTCCGCTGGTCGACGTCAAGGCCGGACGGCTG
GTCGCCGATCCGCCGCTGGGTCTTCTTGACGACACCCGTCCGCCCGCAGGGGTCGAGGGCGAGGTCGAGGAAGATCCGGG
TGTGGGGATCGATGAGGATGGGGACGGCAAGGGGGGCGCGTCATGA

Upstream 100 bases:

>100_bases
CGCTCGCTTTCGGGCCGCGGACCCCTTGCCTCTCCCTGGCCGGTTTGATGGCCGGTAACGGGATGGGCCGGCCAAGCGGC
CGGCAACAGGAACGGTGGCG

Downstream 100 bases:

>100_bases
GTTTGCGCGCCGTCGTTCTGACCCTGTTTCCCGAGATGTTTCCCGGACCGCTTGGTCATTCCATCGCCGGCAAGGCCTTG
GAAACCGGCGCTTGGAGCAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVICQIPGVSDRTAADALKGTRL
FLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHSVHDFGAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRL
VADPPLGLLDDTRPPAGVEGEVEEDPGVGIDEDGDGKGGAS

Sequences:

>Translated_201_residues
MTERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVICQIPGVSDRTAADALKGTRL
FLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHSVHDFGAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRL
VADPPLGLLDDTRPPAGVEGEVEEDPGVGIDEDGDGKGGAS
>Mature_200_residues
TERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVICQIPGVSDRTAADALKGTRLF
LDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHSVHDFGAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRLV
ADPPLGLLDDTRPPAGVEGEVEEDPGVGIDEDGDGKGGAS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=147, Percent_Identity=31.2925170068027, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RHORT (Q2RV58)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426274.1
- ProteinModelPortal:   Q2RV58
- SMR:   Q2RV58
- STRING:   Q2RV58
- GeneID:   3834696
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1186
- NMPDR:   fig|1085.1.peg.3180
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q2RV58
- BioCyc:   RRUB269796:RRU_A1186-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21166; Mature: 21035

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVI
CCCEEEEEEEECCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCEEE
CQIPGVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHS
EEECCCCCCHHHHHHCCHHEEEHHCCCCCCCCCCCCEEEEEEECCCEEEECCCCEEEEEE
VHDFGAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRLVADPPLGLLDDTRPPAGVEG
HHHCCCCCEEEEEECCCCCEEEEEHHHHHHEEEECCCCCEEECCCCCCCCCCCCCCCCCC
EVEEDPGVGIDEDGDGKGGAS
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVI
CCEEEEEEEECCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCEEE
CQIPGVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHS
EEECCCCCCHHHHHHCCHHEEEHHCCCCCCCCCCCCEEEEEEECCCEEEECCCCEEEEEE
VHDFGAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRLVADPPLGLLDDTRPPAGVEG
HHHCCCCCEEEEEECCCCCEEEEEHHHHHHEEEECCCCCEEECCCCCCCCCCCCCCCCCC
EVEEDPGVGIDEDGDGKGGAS
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA