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The map label for this gene is pdxY [H]

Identifier: 83592481

GI number: 83592481

Start: 1352017

End: 1352868

Strand: Direct

Name: pdxY [H]

Synonym: Rru_A1145

Alternate gene names: 83592481

Gene position: 1352017-1352868 (Clockwise)

Preceding gene: 83592480

Following gene: 83592482

Centisome position: 31.06

GC content: 65.14

Gene sequence:

>852_bases
ATGTCGCCAACGCCGTCCATCATCTCGATCCAAAGCCAAGTCGTGCATGGGCATGTCGGCAACAGCGCCGCCGTCTTGCC
GATGCAGGGCCATGGGGTGACCGTCGCCGCGGTGCCGACGACGCTGCTTTCCAACCATCCCGGCTTCGAGACCGTGCGCG
GCCGGGTGCTGGAGTCGGAACTGGTTGGGGATCTGTTGCGCGGGGTCGAGGAACGCGGGTTGATCGAAACGAGCGGCTAT
ATCGTCTCGGGCTATCTCGGCTCCCGCGCCAACGGCGAAGTCGTGGCCTCTTTCGTCAAACGGGCAAGGCGGCTCAACCC
CGACATCACCTATATCTGCGATCCCGTCATGGGAGATGCCGCTCTTGGTGTCTTCGTGGCCGATCAGGTGGTCTCGTGCC
TGTGCGATGACCTGATCCCCCTGGCCGATCTGCTGACGCCCAACCAATTCGAGGTCGGGCTGATCGCCGGTCGGCCGCTA
TCGACGTGGCGTGAGCTTGAGGCGGCCGTTCTGAAAATACGGGCGCCGCGCGGAGCGCGGCTGGTCGTCACGGGCTGCGC
GCTCTCCGATACGCCCGACGGCGCGCTGGAGAATATCGTTTTCGACGACAAGACCCACACCCGGCTGACATCGCCGCGCC
TGCCGCTGGCGCCGGCCGGGACAGGCGATCTCTACACCGGCCTGCTGACGGCCAAACTCGCCCGCGGCCATACGCTGGTC
GAAGCCGCGTGCCATGCCGCGACCAGCGTGCTTGACGTTCTTCAACAGACCATGGCGGCGGGCGAACACGAAATGCAGCT
CGCCAGAGCCATCACAACCCTTGGCCCCGCCTGCAAGGAGACTTCACAATGA

Upstream 100 bases:

>100_bases
TCGGTCTCGTCGCCTATCTCGTCCTCAACGGTCGCCTGCCACGCCGCGAGCCCGCCGACCTGCCGGTGAGCGAAGGAGCC
GCGAAGTGAAAACCCGGCCG

Downstream 100 bases:

>100_bases
CCCTGTTCAATTATCAAGATTTCTTCACCAATGAGCTGACGCAGTTACACCGGGAGGGACGCTATCGCGTTTTCGCCGAC
CTTGAACGGGAAACGCGGAG

Product: pyridoxal kinase

Products: NA

Alternate protein names: PM kinase [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSPTPSIISIQSQVVHGHVGNSAAVLPMQGHGVTVAAVPTTLLSNHPGFETVRGRVLESELVGDLLRGVEERGLIETSGY
IVSGYLGSRANGEVVASFVKRARRLNPDITYICDPVMGDAALGVFVADQVVSCLCDDLIPLADLLTPNQFEVGLIAGRPL
STWRELEAAVLKIRAPRGARLVVTGCALSDTPDGALENIVFDDKTHTRLTSPRLPLAPAGTGDLYTGLLTAKLARGHTLV
EAACHAATSVLDVLQQTMAAGEHEMQLARAITTLGPACKETSQ

Sequences:

>Translated_283_residues
MSPTPSIISIQSQVVHGHVGNSAAVLPMQGHGVTVAAVPTTLLSNHPGFETVRGRVLESELVGDLLRGVEERGLIETSGY
IVSGYLGSRANGEVVASFVKRARRLNPDITYICDPVMGDAALGVFVADQVVSCLCDDLIPLADLLTPNQFEVGLIAGRPL
STWRELEAAVLKIRAPRGARLVVTGCALSDTPDGALENIVFDDKTHTRLTSPRLPLAPAGTGDLYTGLLTAKLARGHTLV
EAACHAATSVLDVLQQTMAAGEHEMQLARAITTLGPACKETSQ
>Mature_282_residues
SPTPSIISIQSQVVHGHVGNSAAVLPMQGHGVTVAAVPTTLLSNHPGFETVRGRVLESELVGDLLRGVEERGLIETSGYI
VSGYLGSRANGEVVASFVKRARRLNPDITYICDPVMGDAALGVFVADQVVSCLCDDLIPLADLLTPNQFEVGLIAGRPLS
TWRELEAAVLKIRAPRGARLVVTGCALSDTPDGALENIVFDDKTHTRLTSPRLPLAPAGTGDLYTGLLTAKLARGHTLVE
AACHAATSVLDVLQQTMAAGEHEMQLARAITTLGPACKETSQ

Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxamine [H]

COG id: COG2240

COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pyridoxine kinase family [H]

Homologues:

Organism=Homo sapiens, GI4505701, Length=277, Percent_Identity=29.2418772563177, Blast_Score=129, Evalue=2e-30,
Organism=Escherichia coli, GI1788758, Length=263, Percent_Identity=30.4182509505703, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787924, Length=271, Percent_Identity=31.3653136531365, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17507759, Length=228, Percent_Identity=34.6491228070175, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17507757, Length=238, Percent_Identity=33.1932773109244, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6320806, Length=282, Percent_Identity=26.5957446808511, Blast_Score=102, Evalue=6e-23,
Organism=Saccharomyces cerevisiae, GI6324354, Length=251, Percent_Identity=30.6772908366534, Blast_Score=99, Evalue=6e-22,
Organism=Drosophila melanogaster, GI45553007, Length=267, Percent_Identity=31.4606741573034, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013749
- InterPro:   IPR004625 [H]

Pfam domain/function: PF08543 Phos_pyr_kin [H]

EC number: =2.7.1.35 [H]

Molecular weight: Translated: 29788; Mature: 29656

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTPSIISIQSQVVHGHVGNSAAVLPMQGHGVTVAAVPTTLLSNHPGFETVRGRVLESE
CCCCCCEEEHHHHHHCCCCCCCEEEEEECCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHH
LVGDLLRGVEERGLIETSGYIVSGYLGSRANGEVVASFVKRARRLNPDITYICDPVMGDA
HHHHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH
ALGVFVADQVVSCLCDDLIPLADLLTPNQFEVGLIAGRPLSTWRELEAAVLKIRAPRGAR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHEECCCCCE
LVVTGCALSDTPDGALENIVFDDKTHTRLTSPRLPLAPAGTGDLYTGLLTAKLARGHTLV
EEEEECCCCCCCCHHHHHCEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH
EAACHAATSVLDVLQQTMAAGEHEMQLARAITTLGPACKETSQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
SPTPSIISIQSQVVHGHVGNSAAVLPMQGHGVTVAAVPTTLLSNHPGFETVRGRVLESE
CCCCCEEEHHHHHHCCCCCCCEEEEEECCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHH
LVGDLLRGVEERGLIETSGYIVSGYLGSRANGEVVASFVKRARRLNPDITYICDPVMGDA
HHHHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH
ALGVFVADQVVSCLCDDLIPLADLLTPNQFEVGLIAGRPLSTWRELEAAVLKIRAPRGAR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHEECCCCCE
LVVTGCALSDTPDGALENIVFDDKTHTRLTSPRLPLAPAGTGDLYTGLLTAKLARGHTLV
EEEEECCCCCCCCHHHHHCEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH
EAACHAATSVLDVLQQTMAAGEHEMQLARAITTLGPACKETSQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA