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The map label for this gene is yddE [C]

Identifier: 83592439

GI number: 83592439

Start: 1295549

End: 1296382

Strand: Direct

Name: yddE [C]

Synonym: Rru_A1103

Alternate gene names: 83592439

Gene position: 1295549-1296382 (Clockwise)

Preceding gene: 83592438

Following gene: 83592440

Centisome position: 29.76

GC content: 69.9

Gene sequence:

>834_bases
ATGACCGCCGCCTTTGCCGCCGGCCCCCGTTTGCGCGTGCCGTTCTTCCAGGTCGACGCCTTCGCCGATGTCGCCTTCGC
CGGCAATCCGGCGGCGGTCTGCCTGCTTGAGAAAGCCTGGCCCGAGGACGAGCTTCTTCAGGCGATCGCCGCGGAGAACA
ACCTGTCGGAAACCGCCTTCGTCGTGCGCGGCGGTGAAAACCACGCCCTGCGCTGGTTCACGCCGCTGACCGAAGTGCCG
CTTTGCGGTCACGCCACCCTGGCCAGCGGCCATGTTTTGCTGCGCGAACTGGGGGCTTGCGGTCCGCAGCGCTTCGATAC
CCGCGCCGGGATGCTGGAGGTCTCGGCCACCGACGAGGGCGCCCTGGCGATGCGTCTGCCCGCCAAGCCGCCCAAATCGG
CGATCTTTCCCGAAGATCTCGACCGTGTCCTGGGGGTGCGGCCGATGGAGGTCGCCCAGGGCGGCGGCTTTCTGATCGTC
GTGCTGGGCGGCGTCGAGGCGGTGCGGGGCTTGCGTCCGCGCCTGAGCATGCTGCGCGCGCTGGGCATTCCCAAGCTGGT
GGTCACCGCCGCCGGAGGCGGAGCCGACAGCGCCGACGCTTGCGATTTCGCCAGCCGGGTTTTCGCCCCCGGGGTGGGGA
TCGACGAGGATCCGGTGACCGGCTCGGCCCATTGCGTCCTGACGCCGTTCTGGGCCAAGCGCCTGGGCCGCGACCGTCTG
CTTGCCCATCAGGTCTCGCCGCGCGGCGGCCGGCTGGTCTGCACCCTGATGGGCGCCGAGGTCGAGATGATCGGTCAGGC
GGTGACGGTGATCAGCGGAACCCTGTCGGTCTGA

Upstream 100 bases:

>100_bases
CCTATGTGCGCAAGGCCATGGAAACCGCGCCCGGTCTCGGTCACGGCCATGGCCCGCTCAATCACGGATTTACCGTTTCC
CCCTTCGAGGTGCCCTTGCC

Downstream 100 bases:

>100_bases
GGCCGGCTGCGTCCTCCTTGGTCCTCCCCGCGGCCCGTCTCTCCCCAGGAAAGCGAATGGGAGGGGCGCGCCGGGGGGGC
GTTGACGGCGGCCCGCCCGG

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MTAAFAAGPRLRVPFFQVDAFADVAFAGNPAAVCLLEKAWPEDELLQAIAAENNLSETAFVVRGGENHALRWFTPLTEVP
LCGHATLASGHVLLRELGACGPQRFDTRAGMLEVSATDEGALAMRLPAKPPKSAIFPEDLDRVLGVRPMEVAQGGGFLIV
VLGGVEAVRGLRPRLSMLRALGIPKLVVTAAGGGADSADACDFASRVFAPGVGIDEDPVTGSAHCVLTPFWAKRLGRDRL
LAHQVSPRGGRLVCTLMGAEVEMIGQAVTVISGTLSV

Sequences:

>Translated_277_residues
MTAAFAAGPRLRVPFFQVDAFADVAFAGNPAAVCLLEKAWPEDELLQAIAAENNLSETAFVVRGGENHALRWFTPLTEVP
LCGHATLASGHVLLRELGACGPQRFDTRAGMLEVSATDEGALAMRLPAKPPKSAIFPEDLDRVLGVRPMEVAQGGGFLIV
VLGGVEAVRGLRPRLSMLRALGIPKLVVTAAGGGADSADACDFASRVFAPGVGIDEDPVTGSAHCVLTPFWAKRLGRDRL
LAHQVSPRGGRLVCTLMGAEVEMIGQAVTVISGTLSV
>Mature_276_residues
TAAFAAGPRLRVPFFQVDAFADVAFAGNPAAVCLLEKAWPEDELLQAIAAENNLSETAFVVRGGENHALRWFTPLTEVPL
CGHATLASGHVLLRELGACGPQRFDTRAGMLEVSATDEGALAMRLPAKPPKSAIFPEDLDRVLGVRPMEVAQGGGFLIVV
LGGVEAVRGLRPRLSMLRALGIPKLVVTAAGGGADSADACDFASRVFAPGVGIDEDPVTGSAHCVLTPFWAKRLGRDRLL
AHQVSPRGGRLVCTLMGAEVEMIGQAVTVISGTLSV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=289, Percent_Identity=39.4463667820069, Blast_Score=158, Evalue=4e-39,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=39.2857142857143, Blast_Score=142, Evalue=4e-34,
Organism=Escherichia coli, GI1787737, Length=263, Percent_Identity=29.277566539924, Blast_Score=74, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17542160, Length=313, Percent_Identity=39.297124600639, Blast_Score=176, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI17542154, Length=313, Percent_Identity=39.297124600639, Blast_Score=176, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI17542158, Length=315, Percent_Identity=37.7777777777778, Blast_Score=157, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI17542152, Length=315, Percent_Identity=37.7777777777778, Blast_Score=157, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6321818, Length=295, Percent_Identity=28.8135593220339, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29029; Mature: 28898

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAFAAGPRLRVPFFQVDAFADVAFAGNPAAVCLLEKAWPEDELLQAIAAENNLSETAF
CCCCCCCCCEEECCEEEECCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEE
VVRGGENHALRWFTPLTEVPLCGHATLASGHVLLRELGACGPQRFDTRAGMLEVSATDEG
EEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
ALAMRLPAKPPKSAIFPEDLDRVLGVRPMEVAQGGGFLIVVLGGVEAVRGLRPRLSMLRA
EEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHH
LGIPKLVVTAAGGGADSADACDFASRVFAPGVGIDEDPVTGSAHCVLTPFWAKRLGRDRL
CCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHCCHHHH
LAHQVSPRGGRLVCTLMGAEVEMIGQAVTVISGTLSV
HHHCCCCCCCEEEEEEECCCHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
TAAFAAGPRLRVPFFQVDAFADVAFAGNPAAVCLLEKAWPEDELLQAIAAENNLSETAF
CCCCCCCCEEECCEEEECCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEE
VVRGGENHALRWFTPLTEVPLCGHATLASGHVLLRELGACGPQRFDTRAGMLEVSATDEG
EEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
ALAMRLPAKPPKSAIFPEDLDRVLGVRPMEVAQGGGFLIVVLGGVEAVRGLRPRLSMLRA
EEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHH
LGIPKLVVTAAGGGADSADACDFASRVFAPGVGIDEDPVTGSAHCVLTPFWAKRLGRDRL
CCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHCCHHHH
LAHQVSPRGGRLVCTLMGAEVEMIGQAVTVISGTLSV
HHHCCCCCCCEEEEEEECCCHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]