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The map label for this gene is ycaN [H]

Identifier: 83592396

GI number: 83592396

Start: 1253602

End: 1254537

Strand: Direct

Name: ycaN [H]

Synonym: Rru_A1060

Alternate gene names: 83592396

Gene position: 1253602-1254537 (Clockwise)

Preceding gene: 83592394

Following gene: 83592397

Centisome position: 28.8

GC content: 70.62

Gene sequence:

>936_bases
ATGGAGCGGGCGGGTCTGGCCGATCTTGATGCTTTCGCCGCCGTCGCCCGCCTGGGCAGCTTCCGCAAGGCGGCGAAGGA
ACGCGGGGTATCGCCCTCGGCGCTGAGCCATTGCGTGCGACGCCTGGAAGATCGCCTGGGGGTGCGTCTGCTCAACCGCA
CCACCCGCAGTCTGGCCCCGACCGAGGCCGGCGAGCGCCTGCTTGATCGCCTGGGGCCGGCGTTGTCGTCGATCGAAGGC
GCGCTGTCGGAGATCGACGGCTTCCGCGACCGTCCCTTCGGTCGCCTGCGCCTGAGCGTGCCGCGCTCGGCCGCGGCCTT
CGCCTTGGCGCCCTTGGTCGCCCGCTTCACCCGGCTTTATCCCGAGGTCGATCTGGAGGTGGAGGCCGATGACGGGCTAG
TCGATGTGGTGGCGGCGGGCTTCGATGCCGGGGTGCGCATCGGTGAAAACATCGCCCTGGATATGATCAGCCTGCCGCTT
GGGCCGCCGCTGCGTCTGGTCATCGTCGGCGCGCCAAGCCTGCTTGCCGGAGCGCCGCCCTTGACCGATCCCGCCGATCT
GCGGCGCTTTCCGACGATCGCCTTCCGCTTTCCCGAGGGCGTCTATCGCTGGGAGCTGGAAAAGGCCGGGCGGCGCGTCA
CCGTCGATCCGACCGGTCCGCTATGCGTCAACGACCATACGCTGCTGCTGGAAGCGGCGAGCGCCGGCGCCGGGCTGGCC
TGCGTGCTGCGGCCGCGCGCCGCCGACTGGCTGGCCGATGGGCGGTTGCGGCCCGTTCTCGAAGACTGGTGCCCCGCCTT
CCCGGGCCTGCGCCTTTACTACCCCAGCCGACGCATGACCGCTGCCCTGCGCGCCTTCATCGAAACCCTGCGCTTAGGGG
CCACACACTCGCCGCCGAACACCGGGGCCCCGTGGGATGGGGGCGACGAGGAATAG

Upstream 100 bases:

>100_bases
ATTCTCCTGACATCGCGAAAGGCGGGGACGAGAGATAGCAGTCGGCCTATTGTTCGATAATCCACCCTGTTTGACGTGAA
CCGATGAAGGGAATTCACCT

Downstream 100 bases:

>100_bases
GCGGAGTGCATCGGGTACCAACGCCGAGGCGGCCTTTTCTTTTTCAGCGCACCGCACCATTTGATATGCATATCACATAT
CAATGGAGGACGCAGTGAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MERAGLADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRLLNRTTRSLAPTEAGERLLDRLGPALSSIEG
ALSEIDGFRDRPFGRLRLSVPRSAAAFALAPLVARFTRLYPEVDLEVEADDGLVDVVAAGFDAGVRIGENIALDMISLPL
GPPLRLVIVGAPSLLAGAPPLTDPADLRRFPTIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLA
CVLRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLGATHSPPNTGAPWDGGDEE

Sequences:

>Translated_311_residues
MERAGLADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRLLNRTTRSLAPTEAGERLLDRLGPALSSIEG
ALSEIDGFRDRPFGRLRLSVPRSAAAFALAPLVARFTRLYPEVDLEVEADDGLVDVVAAGFDAGVRIGENIALDMISLPL
GPPLRLVIVGAPSLLAGAPPLTDPADLRRFPTIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLA
CVLRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLGATHSPPNTGAPWDGGDEE
>Mature_311_residues
MERAGLADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRLLNRTTRSLAPTEAGERLLDRLGPALSSIEG
ALSEIDGFRDRPFGRLRLSVPRSAAAFALAPLVARFTRLYPEVDLEVEADDGLVDVVAAGFDAGVRIGENIALDMISLPL
GPPLRLVIVGAPSLLAGAPPLTDPADLRRFPTIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLA
CVLRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLGATHSPPNTGAPWDGGDEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=40.9556313993174, Blast_Score=227, Evalue=9e-61,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=39.7959183673469, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=30, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=31.3333333333333, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=28.7162162162162, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=25.1748251748252, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693193, Length=276, Percent_Identity=30.7971014492754, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=28.8135593220339, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789173, Length=263, Percent_Identity=28.5171102661597, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=166, Percent_Identity=30.1204819277108, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=34.1666666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=121, Percent_Identity=34.7107438016529, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=192, Percent_Identity=32.8125, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=165, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33527; Mature: 33527

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERAGLADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRLLNRTTRSLAP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGERLLDRLGPALSSIEGALSEIDGFRDRPFGRLRLSVPRSAAAFALAPLVARFTRLY
CHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
PEVDLEVEADDGLVDVVAAGFDAGVRIGENIALDMISLPLGPPLRLVIVGAPSLLAGAPP
CCCCEEEECCCCHHHHHHHCCCCCCCCCCCCEEHHEECCCCCCEEEEEEECCHHHCCCCC
LTDPADLRRFPTIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLA
CCCHHHHHHCCCEEEECCCCCEEEEHHHCCCEEEECCCCCEEECCCEEEEEECCCCCCEE
CVLRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLGATHSPPN
EEECCCHHHHHHCCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCC
TGAPWDGGDEE
CCCCCCCCCCC
>Mature Secondary Structure
MERAGLADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRLLNRTTRSLAP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGERLLDRLGPALSSIEGALSEIDGFRDRPFGRLRLSVPRSAAAFALAPLVARFTRLY
CHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
PEVDLEVEADDGLVDVVAAGFDAGVRIGENIALDMISLPLGPPLRLVIVGAPSLLAGAPP
CCCCEEEECCCCHHHHHHHCCCCCCCCCCCCEEHHEECCCCCCEEEEEEECCHHHCCCCC
LTDPADLRRFPTIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLA
CCCHHHHHHCCCEEEECCCCCEEEEHHHCCCEEEECCCCCEEECCCEEEEEECCCCCCEE
CVLRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLGATHSPPN
EEECCCHHHHHHCCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCC
TGAPWDGGDEE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]