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The map label for this gene is yliB [C]

Identifier: 83592315

GI number: 83592315

Start: 1164259

End: 1165851

Strand: Direct

Name: yliB [C]

Synonym: Rru_A0979

Alternate gene names: 83592315

Gene position: 1164259-1165851 (Clockwise)

Preceding gene: 83592314

Following gene: 83592316

Centisome position: 26.75

GC content: 63.03

Gene sequence:

>1593_bases
ATGTCTCTTAAGCGTATGAGCCGCTGGGCGGCGGCGGTTCTGGTGGCCTCGGCGGCCGCCTTCACCGCCGCCCCCGCCAC
CCGGGCCGCCGAAGGACCCAAGGTCTTGCGGATCGTTCCCCAGGCCGATCTGAAGATCCTCGATCCGATCTGGACGACCG
CCTTCGTCACCCGCAACCACGGCTATATGATTTACGACACGCTGTTTGGCGTCGATGCCGAAGGCGTCATCCATCCCCAA
ATGGTCGATCGCTATGAGGCTTCGGCCGACGCTAAAAGCTTCCGCTTCACCCTGCGCGAGGGGTTGGCCTTCCACGATGG
CCAGCCGGTGACCGCCACCGATGTTATCGCCTCGCTCAAACGCTGGGGGGCGCGCGACAATCTTGGCCAGAAGATGCTGG
CCAGCCTTGAGTCCATCGAGGCGGTCGACGCCAAAACCGTCGCCATGACCTTCAAGACGCCCTTTGGCATGGTGCTGGAC
GCGCTGAGCAAGCCGTCCTCGGTTCCGGCCTTCATCATGCCCGCCCGCGTCGCCGCCACGCCGCCCGACCAGCAGATCAC
CGATACCACCGGCTCGGGCCCCTATATGTTCGTCAAGGATGAATTCCGTCCGGGCGAACGGGTGGTCTATGCCAAGAACC
CGGCCTATGTGCCGCGCGCCGAACCGCCCTCGGGCACGGCCGGCGGCAAGGTGGTTTACGTCGACCGCGCCGAATGGATC
ATCCTCAAGGACGCCCAGACCCAGGCCAACGCCCTGGTCAATGGTGAGGTCGATCTGATCGAATGGCTTCCCGCCGAGCA
GTATGCCGGGCTGAAAAGCAAGCCCGACATCAAGATGGAAGCCCAGGTGGTGAAGATGTCGGTGATGCTTCATCTCAATC
ACCTGATCGCGCCCTTCAACAATCCCAAGATCGCCCAGGCGGCGTTGATGGCGATCAATCAGCAGGCCTTGATGCGCGCC
CAGCTGGTTCACAAGGAGCTCTATAACGGCTGCACCTCGATCTATCCCTGCGGCACGACCTATGCCTCGGAGAACACCGC
GTTCTTCACCGGCAAGCCGCAGTTCGACAAGGCCAAGGCCCTGCTCAAGGAAGCCGGCTACGACGGCACCCCGGTGGTCC
TGATGTATCCGGCCGATTTCGCCGTCATCAACAAATACCCGCCGGTGATGGCCGAATTGCTCAAGCAGGCCGGGTTCGTC
GTCGATATGCAGTCGATGGATTGGCCGACCCTGGTGACGCGACGCACCAAGAAGGACCCGGTGGCGGCGGGCGGCTGGAA
CGCCTTCATCACCTCGTGGGGCATGGCCGATACCATGAACCCGATGTTCTTTGCCCCGCTGACCGGCAGTGGCGAGAAGG
GTTGGTTCGGCTGGACCACCGATGACCAGCTTGAAGCCCTGAAAAGCGAGTTCCTGGTTACCACCGATGGGGCGACGCGC
AAGAAACTGGCCGAGGGCATTCAGCTCCGCGCCATCGAAGCCGCCGTCTTCGGGCCGATCGGCGAGTTCAAGCCGCTGAC
CGCCTACCGGACATCGGTCAGCGGGCTGGTAACCGCCCCCGTTCCGGTGTTCTGGAACCTCAAGAAGGACTGA

Upstream 100 bases:

>100_bases
ATGACAACGCCCCTGTCGCCGACGGCTTTTCCCCCGTCTCCCCCGCTTGTCCCCTCGCTTATCCCCTGCTTGTCCCCCCT
CGCTGATCAAGGATACTGGC

Downstream 100 bases:

>100_bases
CGCCTCCCCGTCGGTCCCTCTCCCGGTGCGCGGACCTGTTCCCCCAAGGCCGCGCACCGGTTCCCCCGTCCCTCCGCTCG
CCGCCGCCAAGAGGCCGTCA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MSLKRMSRWAAAVLVASAAAFTAAPATRAAEGPKVLRIVPQADLKILDPIWTTAFVTRNHGYMIYDTLFGVDAEGVIHPQ
MVDRYEASADAKSFRFTLREGLAFHDGQPVTATDVIASLKRWGARDNLGQKMLASLESIEAVDAKTVAMTFKTPFGMVLD
ALSKPSSVPAFIMPARVAATPPDQQITDTTGSGPYMFVKDEFRPGERVVYAKNPAYVPRAEPPSGTAGGKVVYVDRAEWI
ILKDAQTQANALVNGEVDLIEWLPAEQYAGLKSKPDIKMEAQVVKMSVMLHLNHLIAPFNNPKIAQAALMAINQQALMRA
QLVHKELYNGCTSIYPCGTTYASENTAFFTGKPQFDKAKALLKEAGYDGTPVVLMYPADFAVINKYPPVMAELLKQAGFV
VDMQSMDWPTLVTRRTKKDPVAAGGWNAFITSWGMADTMNPMFFAPLTGSGEKGWFGWTTDDQLEALKSEFLVTTDGATR
KKLAEGIQLRAIEAAVFGPIGEFKPLTAYRTSVSGLVTAPVPVFWNLKKD

Sequences:

>Translated_530_residues
MSLKRMSRWAAAVLVASAAAFTAAPATRAAEGPKVLRIVPQADLKILDPIWTTAFVTRNHGYMIYDTLFGVDAEGVIHPQ
MVDRYEASADAKSFRFTLREGLAFHDGQPVTATDVIASLKRWGARDNLGQKMLASLESIEAVDAKTVAMTFKTPFGMVLD
ALSKPSSVPAFIMPARVAATPPDQQITDTTGSGPYMFVKDEFRPGERVVYAKNPAYVPRAEPPSGTAGGKVVYVDRAEWI
ILKDAQTQANALVNGEVDLIEWLPAEQYAGLKSKPDIKMEAQVVKMSVMLHLNHLIAPFNNPKIAQAALMAINQQALMRA
QLVHKELYNGCTSIYPCGTTYASENTAFFTGKPQFDKAKALLKEAGYDGTPVVLMYPADFAVINKYPPVMAELLKQAGFV
VDMQSMDWPTLVTRRTKKDPVAAGGWNAFITSWGMADTMNPMFFAPLTGSGEKGWFGWTTDDQLEALKSEFLVTTDGATR
KKLAEGIQLRAIEAAVFGPIGEFKPLTAYRTSVSGLVTAPVPVFWNLKKD
>Mature_529_residues
SLKRMSRWAAAVLVASAAAFTAAPATRAAEGPKVLRIVPQADLKILDPIWTTAFVTRNHGYMIYDTLFGVDAEGVIHPQM
VDRYEASADAKSFRFTLREGLAFHDGQPVTATDVIASLKRWGARDNLGQKMLASLESIEAVDAKTVAMTFKTPFGMVLDA
LSKPSSVPAFIMPARVAATPPDQQITDTTGSGPYMFVKDEFRPGERVVYAKNPAYVPRAEPPSGTAGGKVVYVDRAEWII
LKDAQTQANALVNGEVDLIEWLPAEQYAGLKSKPDIKMEAQVVKMSVMLHLNHLIAPFNNPKIAQAALMAINQQALMRAQ
LVHKELYNGCTSIYPCGTTYASENTAFFTGKPQFDKAKALLKEAGYDGTPVVLMYPADFAVINKYPPVMAELLKQAGFVV
DMQSMDWPTLVTRRTKKDPVAAGGWNAFITSWGMADTMNPMFFAPLTGSGEKGWFGWTTDDQLEALKSEFLVTTDGATRK
KLAEGIQLRAIEAAVFGPIGEFKPLTAYRTSVSGLVTAPVPVFWNLKKD

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=498, Percent_Identity=24.8995983935743, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1789397, Length=530, Percent_Identity=25.2830188679245, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787762, Length=513, Percent_Identity=23.3918128654971, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1789887, Length=487, Percent_Identity=21.7659137577002, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787495, Length=502, Percent_Identity=22.3107569721116, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787551, Length=493, Percent_Identity=21.7038539553753, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57875; Mature: 57744

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKRMSRWAAAVLVASAAAFTAAPATRAAEGPKVLRIVPQADLKILDPIWTTAFVTRNH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECHHHHEEEEECCC
GYMIYDTLFGVDAEGVIHPQMVDRYEASADAKSFRFTLREGLAFHDGQPVTATDVIASLK
CEEEEEEEECCCCCCEECHHHHHHHHCCCCHHHHHHHHHHCCEECCCCCCHHHHHHHHHH
RWGARDNLGQKMLASLESIEAVDAKTVAMTFKTPFGMVLDALSKPSSVPAFIMPARVAAT
HCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCCCEEEECCEEECC
PPDQQITDTTGSGPYMFVKDEFRPGERVVYAKNPAYVPRAEPPSGTAGGKVVYVDRAEWI
CCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEE
ILKDAQTQANALVNGEVDLIEWLPAEQYAGLKSKPDIKMEAQVVKMSVMLHLNHLIAPFN
EEECCCCCCCEEECCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NPKIAQAALMAINQQALMRAQLVHKELYNGCTSIYPCGTTYASENTAFFTGKPQFDKAKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH
LLKEAGYDGTPVVLMYPADFAVINKYPPVMAELLKQAGFVVDMQSMDWPTLVTRRTKKDP
HHHHCCCCCCCEEEEECCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCC
VAAGGWNAFITSWGMADTMNPMFFAPLTGSGEKGWFGWTTDDQLEALKSEFLVTTDGATR
CCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHCEEEECCCCHH
KKLAEGIQLRAIEAAVFGPIGEFKPLTAYRTSVSGLVTAPVPVFWNLKKD
HHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHCCCCEEECCCCEEEECCCC
>Mature Secondary Structure 
SLKRMSRWAAAVLVASAAAFTAAPATRAAEGPKVLRIVPQADLKILDPIWTTAFVTRNH
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECHHHHEEEEECCC
GYMIYDTLFGVDAEGVIHPQMVDRYEASADAKSFRFTLREGLAFHDGQPVTATDVIASLK
CEEEEEEEECCCCCCEECHHHHHHHHCCCCHHHHHHHHHHCCEECCCCCCHHHHHHHHHH
RWGARDNLGQKMLASLESIEAVDAKTVAMTFKTPFGMVLDALSKPSSVPAFIMPARVAAT
HCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCCCEEEECCEEECC
PPDQQITDTTGSGPYMFVKDEFRPGERVVYAKNPAYVPRAEPPSGTAGGKVVYVDRAEWI
CCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEE
ILKDAQTQANALVNGEVDLIEWLPAEQYAGLKSKPDIKMEAQVVKMSVMLHLNHLIAPFN
EEECCCCCCCEEECCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NPKIAQAALMAINQQALMRAQLVHKELYNGCTSIYPCGTTYASENTAFFTGKPQFDKAKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH
LLKEAGYDGTPVVLMYPADFAVINKYPPVMAELLKQAGFVVDMQSMDWPTLVTRRTKKDP
HHHHCCCCCCCEEEEECCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCC
VAAGGWNAFITSWGMADTMNPMFFAPLTGSGEKGWFGWTTDDQLEALKSEFLVTTDGATR
CCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHCEEEECCCCHH
KKLAEGIQLRAIEAAVFGPIGEFKPLTAYRTSVSGLVTAPVPVFWNLKKD
HHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHCCCCEEECCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]