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The map label for this gene is rnk [H]

Identifier: 83592278

GI number: 83592278

Start: 1123777

End: 1124187

Strand: Direct

Name: rnk [H]

Synonym: Rru_A0942

Alternate gene names: 83592278

Gene position: 1123777-1124187 (Clockwise)

Preceding gene: 83592272

Following gene: 83592301

Centisome position: 25.82

GC content: 66.42

Gene sequence:

>411_bases
ATGTCGACATCATCCAGCCAATCCGTCGTTCCGCCGCCGGTCGTCATCGACCATGCCGATCACGAGCGCCTTCAGGGTCT
GGCCTTGCGCGCCCTGGCCGGCGCCCCCGACCTTGCCGGCCGTCTGCTGGCCGAGATCGACCGGGCGCGCGTGCTGCCCA
GCGAGAGCGTGCCGGCCGATGTGGTGACTTTGGGAGCGGAAGTGACCTTCCGCGATGAAAGCACCGGCCGGGTGCGCAAG
GTGACTTTGGTCTATCCCGGCGAGGCCGATATCGATCAGGGGAAGATTTCGATCATGACGCCGATCGGCGTCGCCCTGAT
CGGGCTGGCGGTCGGCGCGTCCATCGATTGGCTTACCCGCGATGGCGACGAACGCCATCTCAGCGTTCTGGCCGTCCGCA
AGCCGGAGTAA

Upstream 100 bases:

>100_bases
GCGCGATCGCGTTCTCCCCGGTTCGGGGCTTGTCTTTTCCCGTGCTCATTGATCCGTAACCGCCAAGGCGCCCACCGTCG
CGCCCTTTGGGAGGATAGCC

Downstream 100 bases:

>100_bases
GGGGTGATCGTGCTGAACGGCGGCCGGTCCGGCTTTGGCGCCCCCGGCCGGGGCCGGCCAACCGGCCGGTCGGAGCGGCG
AGAGACCGGGCGGGCGGCCC

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSTSSSQSVVPPPVVIDHADHERLQGLALRALAGAPDLAGRLLAEIDRARVLPSESVPADVVTLGAEVTFRDESTGRVRK
VTLVYPGEADIDQGKISIMTPIGVALIGLAVGASIDWLTRDGDERHLSVLAVRKPE

Sequences:

>Translated_136_residues
MSTSSSQSVVPPPVVIDHADHERLQGLALRALAGAPDLAGRLLAEIDRARVLPSESVPADVVTLGAEVTFRDESTGRVRK
VTLVYPGEADIDQGKISIMTPIGVALIGLAVGASIDWLTRDGDERHLSVLAVRKPE
>Mature_135_residues
STSSSQSVVPPPVVIDHADHERLQGLALRALAGAPDLAGRLLAEIDRARVLPSESVPADVVTLGAEVTFRDESTGRVRKV
TLVYPGEADIDQGKISIMTPIGVALIGLAVGASIDWLTRDGDERHLSVLAVRKPE

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=127, Percent_Identity=43.3070866141732, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14397; Mature: 14265

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSSSQSVVPPPVVIDHADHERLQGLALRALAGAPDLAGRLLAEIDRARVLPSESVPAD
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
VVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMTPIGVALIGLAVGASIDWLTR
EEEECCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEEC
DGDERHLSVLAVRKPE
CCCCCEEEEEEEECCC
>Mature Secondary Structure 
STSSSQSVVPPPVVIDHADHERLQGLALRALAGAPDLAGRLLAEIDRARVLPSESVPAD
CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
VVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMTPIGVALIGLAVGASIDWLTR
EEEECCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEEC
DGDERHLSVLAVRKPE
CCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]