Click here to switch to the map view.

The map label for this gene is pchR [H]

Identifier: 83592215

GI number: 83592215

Start: 1049803

End: 1050846

Strand: Direct

Name: pchR [H]

Synonym: Rru_A0879

Alternate gene names: 83592215

Gene position: 1049803-1050846 (Clockwise)

Preceding gene: 83592214

Following gene: 83592216

Centisome position: 24.12

GC content: 59.67

Gene sequence:

>1044_bases
ATGTCTGTGCAAGAAAGCGTTGGTGGAGACGTCACCGGCTGGTGGCCAAGCGACAACGAGTCCCTGTCCCCCTATCCCCT
GTACCGGGAACGCTTCTGTCGCGAGGGCGGCTTACAACCGGTTTTTAGCGGTCGTACCGTCTTGTTGCCGTTGCGGCCGG
GATTGCTTCTTAGCATGCGTGAGGGACAGGCTTTAACCGATTTGCGCGGGAAGCGCGAAGTGGGGCCGGCCATGCATCTT
GAGATCCTGTTCGCGGCCGAAGGCTATTCCGTCGTTTCCGGAAGTACGGAGCGGTATCCCTTCAAACCCAATACCGTTTC
CCTGCAAGTCACCTCCTCTGCGGTGGTCGCCGAGTTTTTCATCCCCGCCGGCGCGGTGATCCGATCTCTTGCTGTGCGGT
TCAGCGGGCTTTATCTGGATCACCTCGCCAGCAAGGGAGGCTTCGCCGCCCTCTGTTCTGGGGGCGGGGATCCGTTGCTT
TTGTCCAGAGGGGTGGATCTGGTCATGCGCCCCCTGTCCCCGGCCTTGAGGCCTCTCGCCTCGCAGATCCTGGCGACCGA
AGGAGCGACGGACGGCGAACGCCTGTTCCTTGAAGCCAAGATTCTGGAACTGATCTCCGTCGTCCTTTCCACGCCGGCGT
CGGGCGGCGGCCAGTCGCAAACGGAGCCGACGAAGACGGCTCTTTCCAGGCGGGATCATAAGAAGATCGGGCAGGCCCGC
GAACTTCTTATCGGCGATCTGGATAAGACGTGGAAAATCAAAGACCTCGCCCGCCACGTCGGTATGAATGAAAACAAGTT
GAAAGCCGGCTTTCGCCAGATTTACGACAATTCGATCTATGCTTATCTCCAGGATTGGCGCATGCGAGCCGCCTCGCATC
GCCTGAAACAGGGCGAGGACTCGGTAACGGGCGTGGCTTTGAGTGTGGGGTATTCCAATCCCGCCCATTTCGCCAAGGTG
TTCCGTCGCTATTTTGGCGTCTCGCCGAGCCGCTATGCGGAGGACGGGGCCCCGGGGCCCAAAAAAGATAACGAGACTTA
TTAG

Upstream 100 bases:

>100_bases
TAATTGCAAATGACTTGCAATAGCAAATCGACGCTAAGTGTGCTATCGGCCTTGCCATCGCCCCTCGCCTGGACTGGGGC
GATGGAAGGGGAGGGATGCG

Downstream 100 bases:

>100_bases
CAATTAATCCCGATCTCCGCCTTGGGTGGGCGGATCGCGTTAGTGCCGTTTTCCAGATTGCCATACTTCCAGAGCGGTTT
AGCCGAGGAAAGGGCGAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSVQESVGGDVTGWWPSDNESLSPYPLYRERFCREGGLQPVFSGRTVLLPLRPGLLLSMREGQALTDLRGKREVGPAMHL
EILFAAEGYSVVSGSTERYPFKPNTVSLQVTSSAVVAEFFIPAGAVIRSLAVRFSGLYLDHLASKGGFAALCSGGGDPLL
LSRGVDLVMRPLSPALRPLASQILATEGATDGERLFLEAKILELISVVLSTPASGGGQSQTEPTKTALSRRDHKKIGQAR
ELLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGEDSVTGVALSVGYSNPAHFAKV
FRRYFGVSPSRYAEDGAPGPKKDNETY

Sequences:

>Translated_347_residues
MSVQESVGGDVTGWWPSDNESLSPYPLYRERFCREGGLQPVFSGRTVLLPLRPGLLLSMREGQALTDLRGKREVGPAMHL
EILFAAEGYSVVSGSTERYPFKPNTVSLQVTSSAVVAEFFIPAGAVIRSLAVRFSGLYLDHLASKGGFAALCSGGGDPLL
LSRGVDLVMRPLSPALRPLASQILATEGATDGERLFLEAKILELISVVLSTPASGGGQSQTEPTKTALSRRDHKKIGQAR
ELLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGEDSVTGVALSVGYSNPAHFAKV
FRRYFGVSPSRYAEDGAPGPKKDNETY
>Mature_346_residues
SVQESVGGDVTGWWPSDNESLSPYPLYRERFCREGGLQPVFSGRTVLLPLRPGLLLSMREGQALTDLRGKREVGPAMHLE
ILFAAEGYSVVSGSTERYPFKPNTVSLQVTSSAVVAEFFIPAGAVIRSLAVRFSGLYLDHLASKGGFAALCSGGGDPLLL
SRGVDLVMRPLSPALRPLASQILATEGATDGERLFLEAKILELISVVLSTPASGGGQSQTEPTKTALSRRDHKKIGQARE
LLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGEDSVTGVALSVGYSNPAHFAKVF
RRYFGVSPSRYAEDGAPGPKKDNETY

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37833; Mature: 37701

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQESVGGDVTGWWPSDNESLSPYPLYRERFCREGGLQPVFSGRTVLLPLRPGLLLSMR
CCCCCHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCEEEEEC
EGQALTDLRGKREVGPAMHLEILFAAEGYSVVSGSTERYPFKPNTVSLQVTSSAVVAEFF
CCCHHHHHCCCHHCCCCEEEEEEEEECCCEEECCCCCCCCCCCCEEEEEEECHHHHHHHH
IPAGAVIRSLAVRFSGLYLDHLASKGGFAALCSGGGDPLLLSRGVDLVMRPLSPALRPLA
HCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHH
SQILATEGATDGERLFLEAKILELISVVLSTPASGGGQSQTEPTKTALSRRDHKKIGQAR
HHHHHHCCCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ELLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGED
HHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
SVTGVALSVGYSNPAHFAKVFRRYFGVSPSRYAEDGAPGPKKDNETY
CCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVQESVGGDVTGWWPSDNESLSPYPLYRERFCREGGLQPVFSGRTVLLPLRPGLLLSMR
CCCCHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCEEEEEC
EGQALTDLRGKREVGPAMHLEILFAAEGYSVVSGSTERYPFKPNTVSLQVTSSAVVAEFF
CCCHHHHHCCCHHCCCCEEEEEEEEECCCEEECCCCCCCCCCCCEEEEEEECHHHHHHHH
IPAGAVIRSLAVRFSGLYLDHLASKGGFAALCSGGGDPLLLSRGVDLVMRPLSPALRPLA
HCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHH
SQILATEGATDGERLFLEAKILELISVVLSTPASGGGQSQTEPTKTALSRRDHKKIGQAR
HHHHHHCCCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ELLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGED
HHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
SVTGVALSVGYSNPAHFAKVFRRYFGVSPSRYAEDGAPGPKKDNETY
CCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]