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The map label for this gene is ydiF [H]

Identifier: 83592214

GI number: 83592214

Start: 1048054

End: 1049676

Strand: Direct

Name: ydiF [H]

Synonym: Rru_A0878

Alternate gene names: 83592214

Gene position: 1048054-1049676 (Clockwise)

Preceding gene: 83592202

Following gene: 83592215

Centisome position: 24.08

GC content: 63.89

Gene sequence:

>1623_bases
ATGATTCGTCTTGAAACCATCACCAAGCAGACCAGCCACCGCATTCTTTTTTTCGAGGCCTCCGCCGCGCTCAACCGGGG
TGAGAAAATTGGTCTCGTCGGTCCGAACGGGGCGGGCAAGACCACGCTGTTTCGCATGATCACCGGCGAGGAGGCGCCCG
ACGAGGGGCAGGTGGCGGTCGAGAAGCAGGTCTCGATCGGCTATTTCAACCAGGATGTCGGCGAGATGGCCGGCCGCACG
GCGGTCGCCGAGGTGATGGATGGGGCCGGGCCGGTTAGCGCCGTGGCCAGCGAATTGGCCGTTCTGGAAGCCGCCATGGC
CGATCCCGGGCGCGCCGACGACATGGACACCATCATCGAACGCTATGGCGAGGTGCAGGCGCGCTTCGAGGAACTGGGCG
GCTATGAGTTGGAGGGGCGGGCGCGCGAAGTGCTGGCCGGGCTCAGCTTCAGCCAGGAGATGATGGACAGCGACGTCGGC
GCGCTGTCGGGCGGCTGGAAGATGCGGGTGGCGCTTGGCCGCATCCTGCTGATGCGCCCCGACGCCATGCTTCTTGACGA
GCCGAGCAACCACCTTGACCTTGAAAGCCTGATCTGGCTGGAGGACTTCCTGAAGGGCTATGAAGGCGCCCTGCTGATGA
CCTCCCATGACCGCGAGTTCCTCAACCGCATCGTCACCAAGATCATCGAGATCGATGGCGGAGCCTTGACCAGCTACTCG
GGGGATTACGCCTTTTACGAACGCCAGCGGGCCTTGAACGAAAAGCAGCAGCAGGCCCAGTTCGAACGCCAGCAGGCCAT
GCTGGCCAAGGAATTGAAGTTCATCGAACGCTTCAAGGCCCGGGCCTCCCACGCCAGTCAGGTGCAAAGCCGGGTGAAGA
AGCTTGATAAGATCGAGCGCTTCGAGCCGCCCCGGCGCCGCCAAAGCGTTTCCTTCGATTTCCCGCAGGCGCCGCGCTCG
GGCGAGGATGTCGTGGTCTTGCGCGAGGTGTCCAAGGGCTATGGCGCCCGGGCGATCTACCAGGGGTTCGACTTCAAGAT
CCGCCGCAAAGAGCGCTGGTGCGTCATGGGCGTCAACGGCGCGGGCAAATCGACGCTGTTGAAACTGGTGGCCGGGGCGA
CCACCCCCGACAGCGGCAGCGTCAGCGTCGGCGGCAGTGTCAAAATGGGCTATTTCTCCCAGCACGCCATGGAAGTGCTC
GATGGCGACAACACGGTGTTTGAATCCCTGGAAAGCGCGTTCCCCCAGGCCGGCCAGGGGTCGCTGCGGGCGCTGGCCGG
CTGTTTCGGGTTCTCCGGCGATGACGTGGAAAAGAAATGCCGCGTGCTGTCGGGCGGCGAAAAGGCCCGGCTGGTGATGG
CGACCCTGCTGTTCAACCCGCCCAACTTCCTGGTGCTCGACGAGCCGACCAACCACCTTGATCTCGACACCAAGGAAATG
CTGATCACGGCTTTGGCCGATTACGACGGCACCATGCTGTTCGTCTCCCACGACCGCCATTTCCTGGCGACGCTGTCCAA
CCGGGTGCTGGAGCTGACCCCAGAGGGCATCCACCAATACGACGGCGGCTATACGGAGTACGTGGCGCGCACCGGCCAGG
AGGCGCCGGGACTGCATCCCTGA

Upstream 100 bases:

>100_bases
GTAATCGGGGACGATGGCCTTGGCAACGAGATAAGGACTCTGGCGCGCCGCTCCTCCTGTGGCATAAGGGGTCAAACAGC
GTCCAGGATCCCGATCGCCC

Downstream 100 bases:

>100_bases
TAAAGCGCTTCTGGCGTCGGGAGCTTTAATTGCAAATGACTTGCAATAGCAAATCGACGCTAAGTGTGCTATCGGCCTTG
CCATCGCCCCTCGCCTGGAC

Product: ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIRLETITKQTSHRILFFEASAALNRGEKIGLVGPNGAGKTTLFRMITGEEAPDEGQVAVEKQVSIGYFNQDVGEMAGRT
AVAEVMDGAGPVSAVASELAVLEAAMADPGRADDMDTIIERYGEVQARFEELGGYELEGRAREVLAGLSFSQEMMDSDVG
ALSGGWKMRVALGRILLMRPDAMLLDEPSNHLDLESLIWLEDFLKGYEGALLMTSHDREFLNRIVTKIIEIDGGALTSYS
GDYAFYERQRALNEKQQQAQFERQQAMLAKELKFIERFKARASHASQVQSRVKKLDKIERFEPPRRRQSVSFDFPQAPRS
GEDVVVLREVSKGYGARAIYQGFDFKIRRKERWCVMGVNGAGKSTLLKLVAGATTPDSGSVSVGGSVKMGYFSQHAMEVL
DGDNTVFESLESAFPQAGQGSLRALAGCFGFSGDDVEKKCRVLSGGEKARLVMATLLFNPPNFLVLDEPTNHLDLDTKEM
LITALADYDGTMLFVSHDRHFLATLSNRVLELTPEGIHQYDGGYTEYVARTGQEAPGLHP

Sequences:

>Translated_540_residues
MIRLETITKQTSHRILFFEASAALNRGEKIGLVGPNGAGKTTLFRMITGEEAPDEGQVAVEKQVSIGYFNQDVGEMAGRT
AVAEVMDGAGPVSAVASELAVLEAAMADPGRADDMDTIIERYGEVQARFEELGGYELEGRAREVLAGLSFSQEMMDSDVG
ALSGGWKMRVALGRILLMRPDAMLLDEPSNHLDLESLIWLEDFLKGYEGALLMTSHDREFLNRIVTKIIEIDGGALTSYS
GDYAFYERQRALNEKQQQAQFERQQAMLAKELKFIERFKARASHASQVQSRVKKLDKIERFEPPRRRQSVSFDFPQAPRS
GEDVVVLREVSKGYGARAIYQGFDFKIRRKERWCVMGVNGAGKSTLLKLVAGATTPDSGSVSVGGSVKMGYFSQHAMEVL
DGDNTVFESLESAFPQAGQGSLRALAGCFGFSGDDVEKKCRVLSGGEKARLVMATLLFNPPNFLVLDEPTNHLDLDTKEM
LITALADYDGTMLFVSHDRHFLATLSNRVLELTPEGIHQYDGGYTEYVARTGQEAPGLHP
>Mature_540_residues
MIRLETITKQTSHRILFFEASAALNRGEKIGLVGPNGAGKTTLFRMITGEEAPDEGQVAVEKQVSIGYFNQDVGEMAGRT
AVAEVMDGAGPVSAVASELAVLEAAMADPGRADDMDTIIERYGEVQARFEELGGYELEGRAREVLAGLSFSQEMMDSDVG
ALSGGWKMRVALGRILLMRPDAMLLDEPSNHLDLESLIWLEDFLKGYEGALLMTSHDREFLNRIVTKIIEIDGGALTSYS
GDYAFYERQRALNEKQQQAQFERQQAMLAKELKFIERFKARASHASQVQSRVKKLDKIERFEPPRRRQSVSFDFPQAPRS
GEDVVVLREVSKGYGARAIYQGFDFKIRRKERWCVMGVNGAGKSTLLKLVAGATTPDSGSVSVGGSVKMGYFSQHAMEVL
DGDNTVFESLESAFPQAGQGSLRALAGCFGFSGDDVEKKCRVLSGGEKARLVMATLLFNPPNFLVLDEPTNHLDLDTKEM
LITALADYDGTMLFVSHDRHFLATLSNRVLELTPEGIHQYDGGYTEYVARTGQEAPGLHP

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=535, Percent_Identity=35.1401869158879, Blast_Score=300, Evalue=2e-81,
Organism=Homo sapiens, GI10947137, Length=537, Percent_Identity=33.3333333333333, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI27881506, Length=537, Percent_Identity=33.3333333333333, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI69354671, Length=539, Percent_Identity=33.2096474953618, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI10947135, Length=539, Percent_Identity=33.2096474953618, Blast_Score=239, Evalue=4e-63,
Organism=Escherichia coli, GI1789751, Length=528, Percent_Identity=38.8257575757576, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1787041, Length=541, Percent_Identity=34.0110905730129, Blast_Score=320, Evalue=1e-88,
Organism=Escherichia coli, GI2367384, Length=506, Percent_Identity=32.8063241106719, Blast_Score=274, Evalue=9e-75,
Organism=Escherichia coli, GI1787182, Length=536, Percent_Identity=35.2611940298507, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081782, Length=538, Percent_Identity=24.1635687732342, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789873, Length=227, Percent_Identity=27.3127753303965, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787164, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786872, Length=258, Percent_Identity=24.4186046511628, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787792, Length=201, Percent_Identity=25.8706467661692, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=547, Percent_Identity=31.6270566727605, Blast_Score=296, Evalue=2e-80,
Organism=Caenorhabditis elegans, GI17553372, Length=533, Percent_Identity=33.3958724202627, Blast_Score=285, Evalue=4e-77,
Organism=Caenorhabditis elegans, GI17555318, Length=530, Percent_Identity=31.8867924528302, Blast_Score=269, Evalue=3e-72,
Organism=Caenorhabditis elegans, GI71983523, Length=258, Percent_Identity=25.968992248062, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=258, Percent_Identity=25.968992248062, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=258, Percent_Identity=25.968992248062, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=549, Percent_Identity=31.3296903460838, Blast_Score=276, Evalue=7e-75,
Organism=Saccharomyces cerevisiae, GI6320874, Length=534, Percent_Identity=31.4606741573034, Blast_Score=272, Evalue=1e-73,
Organism=Saccharomyces cerevisiae, GI6324314, Length=408, Percent_Identity=27.9411764705882, Blast_Score=130, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6323278, Length=413, Percent_Identity=25.6658595641646, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6325030, Length=268, Percent_Identity=30.5970149253731, Blast_Score=118, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24666836, Length=530, Percent_Identity=33.2075471698113, Blast_Score=305, Evalue=8e-83,
Organism=Drosophila melanogaster, GI24642252, Length=513, Percent_Identity=32.5536062378168, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI18859989, Length=513, Percent_Identity=32.5536062378168, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=30.7977736549165, Blast_Score=268, Evalue=9e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59481; Mature: 59481

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLETITKQTSHRILFFEASAALNRGEKIGLVGPNGAGKTTLFRMITGEEAPDEGQVAV
CEEECHHHHCCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEE
EKQVSIGYFNQDVGEMAGRTAVAEVMDGAGPVSAVASELAVLEAAMADPGRADDMDTIIE
EEEEEECCCCCCHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RYGEVQARFEELGGYELEGRAREVLAGLSFSQEMMDSDVGALSGGWKMRVALGRILLMRP
HHHHHHHHHHHHCCEEECCHHHHHHHCCCHHHHHHHCCCCCCCCCCEEHHHHCEEEEECC
DAMLLDEPSNHLDLESLIWLEDFLKGYEGALLMTSHDREFLNRIVTKIIEIDGGALTSYS
CCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
GDYAFYERQRALNEKQQQAQFERQQAMLAKELKFIERFKARASHASQVQSRVKKLDKIER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEPPRRRQSVSFDFPQAPRSGEDVVVLREVSKGYGARAIYQGFDFKIRRKERWCVMGVNG
CCCCHHHCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCHHHCCCCEEEEECCCEEEEECCC
AGKSTLLKLVAGATTPDSGSVSVGGSVKMGYFSQHAMEVLDGDNTVFESLESAFPQAGQG
CCHHHHHHHHHCCCCCCCCCEEECCCEEECHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
SLRALAGCFGFSGDDVEKKCRVLSGGEKARLVMATLLFNPPNFLVLDEPTNHLDLDTKEM
HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHEEHHHHCCCCCEEEECCCCCCCCCCHHHH
LITALADYDGTMLFVSHDRHFLATLSNRVLELTPEGIHQYDGGYTEYVARTGQEAPGLHP
HHHHHHCCCCEEEEEECCCHHHHHHHCCCEEECCHHHHHCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIRLETITKQTSHRILFFEASAALNRGEKIGLVGPNGAGKTTLFRMITGEEAPDEGQVAV
CEEECHHHHCCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEE
EKQVSIGYFNQDVGEMAGRTAVAEVMDGAGPVSAVASELAVLEAAMADPGRADDMDTIIE
EEEEEECCCCCCHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RYGEVQARFEELGGYELEGRAREVLAGLSFSQEMMDSDVGALSGGWKMRVALGRILLMRP
HHHHHHHHHHHHCCEEECCHHHHHHHCCCHHHHHHHCCCCCCCCCCEEHHHHCEEEEECC
DAMLLDEPSNHLDLESLIWLEDFLKGYEGALLMTSHDREFLNRIVTKIIEIDGGALTSYS
CCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
GDYAFYERQRALNEKQQQAQFERQQAMLAKELKFIERFKARASHASQVQSRVKKLDKIER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEPPRRRQSVSFDFPQAPRSGEDVVVLREVSKGYGARAIYQGFDFKIRRKERWCVMGVNG
CCCCHHHCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCHHHCCCCEEEEECCCEEEEECCC
AGKSTLLKLVAGATTPDSGSVSVGGSVKMGYFSQHAMEVLDGDNTVFESLESAFPQAGQG
CCHHHHHHHHHCCCCCCCCCEEECCCEEECHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
SLRALAGCFGFSGDDVEKKCRVLSGGEKARLVMATLLFNPPNFLVLDEPTNHLDLDTKEM
HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHEEHHHHCCCCCEEEECCCCCCCCCCHHHH
LITALADYDGTMLFVSHDRHFLATLSNRVLELTPEGIHQYDGGYTEYVARTGQEAPGLHP
HHHHHHCCCCEEEEEECCCHHHHHHHCCCEEECCHHHHHCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]