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The map label for this gene is slyA [H]

Identifier: 83592197

GI number: 83592197

Start: 1026794

End: 1027267

Strand: Reverse

Name: slyA [H]

Synonym: Rru_A0861

Alternate gene names: 83592197

Gene position: 1027267-1026794 (Counterclockwise)

Preceding gene: 83592199

Following gene: 83592196

Centisome position: 23.6

GC content: 63.29

Gene sequence:

>474_bases
ATGTCCCCGTCAGATGCCCCCCTCCCCCCGATCTATACGGCCGAGACTTATGATGCGGCGCGCAATATCGCCCGCCATCT
GATCGATATCGGTACCGAGCTGCGCGCGGCGATCGACCGTCGGTCGATCCCCCTGGGCATCAGCGGGCCGCAATGGGTCG
TGCTGGTTCGCATCGCCAGTGGCGTCGACACCAGTGCCGCCGAGTTATGCCGGACGATCGGTTATGACAGCGGATCGATG
ACCCGGATGCTCGACCGCCTGGAAAAGCGGGGATTGATCTATCGCCGCCGCAGCATCGAGGATCGGCGGGTGGTCCGGCT
CTCTTTGACCGACCTGGGCAAGGAGTTGTATCCCCAGCTCACGCCCATCGCCATCGAGACCCTGAACCACGTCCTCAAGG
GCTTCACGCCCGAGGAGGCCGATATCCTGATGGGCCTCCTCGATCGCATCCTGGCCAATGCCAATACCGCATGA

Upstream 100 bases:

>100_bases
GACGGTTTTTAACTCCCCAAGGCGGGAAGGCGGAAAAATCGCTCCTTGACAGGCAGCCTCGGCCACGACACTCTCTGCCT
AGGCAGCCATTGAGAGCCCC

Downstream 100 bases:

>100_bases
CCTTTTTTTATTCATACGACTGCCTAGGCAGTAACAGTTAAGGCAACCTTTAGAGGGCGCGAAGCGATGAACATGGCATT
CCTGGTCGCACCGTCGCTGA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSPSDAPLPPIYTAETYDAARNIARHLIDIGTELRAAIDRRSIPLGISGPQWVVLVRIASGVDTSAAELCRTIGYDSGSM
TRMLDRLEKRGLIYRRRSIEDRRVVRLSLTDLGKELYPQLTPIAIETLNHVLKGFTPEEADILMGLLDRILANANTA

Sequences:

>Translated_157_residues
MSPSDAPLPPIYTAETYDAARNIARHLIDIGTELRAAIDRRSIPLGISGPQWVVLVRIASGVDTSAAELCRTIGYDSGSM
TRMLDRLEKRGLIYRRRSIEDRRVVRLSLTDLGKELYPQLTPIAIETLNHVLKGFTPEEADILMGLLDRILANANTA
>Mature_156_residues
SPSDAPLPPIYTAETYDAARNIARHLIDIGTELRAAIDRRSIPLGISGPQWVVLVRIASGVDTSAAELCRTIGYDSGSMT
RMLDRLEKRGLIYRRRSIEDRRVVRLSLTDLGKELYPQLTPIAIETLNHVLKGFTPEEADILMGLLDRILANANTA

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=120, Percent_Identity=34.1666666666667, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17398; Mature: 17267

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSDAPLPPIYTAETYDAARNIARHLIDIGTELRAAIDRRSIPLGISGPQWVVLVRIAS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECC
GVDTSAAELCRTIGYDSGSMTRMLDRLEKRGLIYRRRSIEDRRVVRLSLTDLGKELYPQL
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHEEHHHHHHHHHHCCCC
TPIAIETLNHVLKGFTPEEADILMGLLDRILANANTA
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SPSDAPLPPIYTAETYDAARNIARHLIDIGTELRAAIDRRSIPLGISGPQWVVLVRIAS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECC
GVDTSAAELCRTIGYDSGSMTRMLDRLEKRGLIYRRRSIEDRRVVRLSLTDLGKELYPQL
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHEEHHHHHHHHHHCCCC
TPIAIETLNHVLKGFTPEEADILMGLLDRILANANTA
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA