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The map label for this gene is pchR [H]

Identifier: 83592177

GI number: 83592177

Start: 1001352

End: 1002242

Strand: Direct

Name: pchR [H]

Synonym: Rru_A0841

Alternate gene names: 83592177

Gene position: 1001352-1002242 (Clockwise)

Preceding gene: 83592176

Following gene: 83592178

Centisome position: 23.0

GC content: 63.3

Gene sequence:

>891_bases
ATGAGTATTACCATCATAACGCCCCCCAAGACCGCGGGCATCGTGGTAAAGCCGGAAAGTCGGATGGACGTGTCTTGTAT
CGACCCGCAGATGACGTTGATGGCGGGAACCTATTGCTCCGACACTGAGGACTGGTACGAGGAGCCGCTGGAACGGGGGG
TGCGGCTCATTCTGGTGCAAAGTGGCCGGTTGCGGTGTCGGGTACCGGGGCAGCCCGAGCATCTGATCGAAGGGCCGATG
CTTTGTACCATCGCCAACGCCGGCGATTTCACCTCCGCCCAGGTCTATGACACGGCTCGGCCCTTGCGCTACACCATGCT
GCAGCTGTTCGACGACGATCTGGAGGGGCGTCTGGGCTGGTTGCCGGACTCGCTTCGACCACGACGGGGGGAGGATCCCC
TGATGATCAGTTGTCCGGCGACCAAGGCGATACAGGCTCTGGCCTCCCAGATCGCCACATGTCAGATGGACGGCCCCATC
CGGGATTTCTATCTGGGCGGAAAGGCCTTGGAACTGGCGGCGCTCAGCGTCCAGACCCTGTCGGGCGCCCCGGCGACGGG
GAGCGACGAGAGCATTACCAGCGCCGAGGTGGAGCGCATCCATGCCGCCCGGGCCATCCTCGTGGAGGCTCTGCGGGAGC
CGCCGACCCTGGATCAACTGGCGCTGCGGGTGGGCATGAATCGGCGCAAGTTGACCCTTGGATTCCGCAAGGTGTTTGGG
ACCAGCGTGTTCTGCTATCTCCAGGAATACCGCCTGCGCGAGGCCCATCGCATGCTCTGCGACGAGGAAGCCAACGTTTC
AACCGTCGCTCACTTGGTGGGGTATAGTCCCGCCCATTTCGCCACCGCGTTCCGCAAGCGCTACGGCCTATCGCCCCGGG
ATATACGCTGA

Upstream 100 bases:

>100_bases
GGTGGAAACGGCCGCGCTTGTCTGGACGCGGGGGGCCTTGCCGCATGTATCCACAGAGACTGTCGTCAAGGCGACGACGC
TTAGAGCGTAGGAACGACCG

Downstream 100 bases:

>100_bases
CCTCGGTCCGCGCCGCCGGTCGCGGGGCCGCCCGCGCACAGCGCGGCGCGCGGATTATCGCTGTCGTCCTCTTTGATTGC
CTCCGAGCGAAAGAAATGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSITIITPPKTAGIVVKPESRMDVSCIDPQMTLMAGTYCSDTEDWYEEPLERGVRLILVQSGRLRCRVPGQPEHLIEGPM
LCTIANAGDFTSAQVYDTARPLRYTMLQLFDDDLEGRLGWLPDSLRPRRGEDPLMISCPATKAIQALASQIATCQMDGPI
RDFYLGGKALELAALSVQTLSGAPATGSDESITSAEVERIHAARAILVEALREPPTLDQLALRVGMNRRKLTLGFRKVFG
TSVFCYLQEYRLREAHRMLCDEEANVSTVAHLVGYSPAHFATAFRKRYGLSPRDIR

Sequences:

>Translated_296_residues
MSITIITPPKTAGIVVKPESRMDVSCIDPQMTLMAGTYCSDTEDWYEEPLERGVRLILVQSGRLRCRVPGQPEHLIEGPM
LCTIANAGDFTSAQVYDTARPLRYTMLQLFDDDLEGRLGWLPDSLRPRRGEDPLMISCPATKAIQALASQIATCQMDGPI
RDFYLGGKALELAALSVQTLSGAPATGSDESITSAEVERIHAARAILVEALREPPTLDQLALRVGMNRRKLTLGFRKVFG
TSVFCYLQEYRLREAHRMLCDEEANVSTVAHLVGYSPAHFATAFRKRYGLSPRDIR
>Mature_295_residues
SITIITPPKTAGIVVKPESRMDVSCIDPQMTLMAGTYCSDTEDWYEEPLERGVRLILVQSGRLRCRVPGQPEHLIEGPML
CTIANAGDFTSAQVYDTARPLRYTMLQLFDDDLEGRLGWLPDSLRPRRGEDPLMISCPATKAIQALASQIATCQMDGPIR
DFYLGGKALELAALSVQTLSGAPATGSDESITSAEVERIHAARAILVEALREPPTLDQLALRVGMNRRKLTLGFRKVFGT
SVFCYLQEYRLREAHRMLCDEEANVSTVAHLVGYSPAHFATAFRKRYGLSPRDIR

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32832; Mature: 32701

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITIITPPKTAGIVVKPESRMDVSCIDPQMTLMAGTYCSDTEDWYEEPLERGVRLILVQ
CEEEEECCCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEE
SGRLRCRVPGQPEHLIEGPMLCTIANAGDFTSAQVYDTARPLRYTMLQLFDDDLEGRLGW
CCCEEEECCCCCHHHHCCCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCC
LPDSLRPRRGEDPLMISCPATKAIQALASQIATCQMDGPIRDFYLGGKALELAALSVQTL
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHEECCCCCHHHHEECCCHHHHHHHHHHHC
SGAPATGSDESITSAEVERIHAARAILVEALREPPTLDQLALRVGMNRRKLTLGFRKVFG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHH
TSVFCYLQEYRLREAHRMLCDEEANVSTVAHLVGYSPAHFATAFRKRYGLSPRDIR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SITIITPPKTAGIVVKPESRMDVSCIDPQMTLMAGTYCSDTEDWYEEPLERGVRLILVQ
EEEEECCCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEE
SGRLRCRVPGQPEHLIEGPMLCTIANAGDFTSAQVYDTARPLRYTMLQLFDDDLEGRLGW
CCCEEEECCCCCHHHHCCCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCC
LPDSLRPRRGEDPLMISCPATKAIQALASQIATCQMDGPIRDFYLGGKALELAALSVQTL
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHEECCCCCHHHHEECCCHHHHHHHHHHHC
SGAPATGSDESITSAEVERIHAARAILVEALREPPTLDQLALRVGMNRRKLTLGFRKVFG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHH
TSVFCYLQEYRLREAHRMLCDEEANVSTVAHLVGYSPAHFATAFRKRYGLSPRDIR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]