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The map label for this gene is pchR [H]

Identifier: 83592175

GI number: 83592175

Start: 998548

End: 999531

Strand: Direct

Name: pchR [H]

Synonym: Rru_A0839

Alternate gene names: 83592175

Gene position: 998548-999531 (Clockwise)

Preceding gene: 83592170

Following gene: 83592176

Centisome position: 22.94

GC content: 68.6

Gene sequence:

>984_bases
ATGAGGGATCTGGCCGCGCCGCACCTTGGTATCGACACCCCGCGCCCGATCCTCGTTGGGCGGGACGATCGGCGGGCGCC
TAGCCCCGCTGTCGCTAGGGGTGTCCCGCCGCTTCCCGGCGGAGCGGACCCGCTGGCAGGGCGCGAAGACATCACAATCC
GGGTTTGGACCGGCCCGTCGGAGACGGAGTGGCAGCTGAAGGGCGAAATCCCGCCCCTGGTCTGCATTGGCGTGCTGTTG
GACGGGAAGCTGGAAATCCTGCCCCAGAACGGCCCGCCCCTGACTCTGCGCGCGGGCACCACGGTGCTGCACGCGGTCGC
CCGCCCCGTGGCCGGACAGGACACCCTACCCCGCACGGGCGCTTTCCGGCTGGTTGACGTGCGGTACGGCGCCGATGCTT
TTCTGCCGATCCTCCATGCGCTGGCGATCGCCGCACCGCCGCCGATCAGGGGGGGCGGGGCGGCGGCCGCCTGGGATGGT
GCGATTGTGCGGCAGGGCCCGACCTCGACGGCGGCCCGGCGGGTCGCTACCGAAATTCTGGCGAGCGACGGGTTCGACGA
TCCGATCCGCACGGTGTATCTGCGGGCGAAGGCCCTGGAGCTGCTTGCGGTCGTCTTACGGGACATGGCGTCCGGGGTGG
CGGAAAGCCTGCCGCTTCGTGATCGGAAACGGGTTGTTTTGGCCTTGCATCTGCTTGAGGAGTGCTACGGGGAGACGTGG
ACCACCGCCCGGCTGGCCTGCCGCGTCGGCCTGAGCGAGAAAAAGCTTCAGGCCGGATTCCGCCAAGTCGTCGGCGCCTC
CGTTCATACGCACCTGCGGGCGATGCGGATGGCGGCCGCCATGGCCATGCTGGGTCGAGGCATGAGCGTGACGGAAACGG
CCTATGCCATCGGGTTTTCCAGCCTTAGCCACTTCAGCAAGGCCTTCAAGGACCACAGCGGGATGTCCCCGCAGATCTGG
GCAAAACAGCACGCCGACGCGTGA

Upstream 100 bases:

>100_bases
GGACAGCGCGCTCACAGACATGCTATCGCGTCTCAATCGCATGTCTGGAGGTCGGGTGTCTAACGATGGCCCGGCAGAAT
TTGTGGATTCGGGACAAAAA

Downstream 100 bases:

>100_bases
CGCCGGCGGAACCGGGGATGGCCTGGGAGCGGGAGAGATCTGTTCGATCGCCGCCAGGAGTCTGTGAGCGACCCGGCCCG
GCGTGACCCCGGCCCTCTCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MRDLAAPHLGIDTPRPILVGRDDRRAPSPAVARGVPPLPGGADPLAGREDITIRVWTGPSETEWQLKGEIPPLVCIGVLL
DGKLEILPQNGPPLTLRAGTTVLHAVARPVAGQDTLPRTGAFRLVDVRYGADAFLPILHALAIAAPPPIRGGGAAAAWDG
AIVRQGPTSTAARRVATEILASDGFDDPIRTVYLRAKALELLAVVLRDMASGVAESLPLRDRKRVVLALHLLEECYGETW
TTARLACRVGLSEKKLQAGFRQVVGASVHTHLRAMRMAAAMAMLGRGMSVTETAYAIGFSSLSHFSKAFKDHSGMSPQIW
AKQHADA

Sequences:

>Translated_327_residues
MRDLAAPHLGIDTPRPILVGRDDRRAPSPAVARGVPPLPGGADPLAGREDITIRVWTGPSETEWQLKGEIPPLVCIGVLL
DGKLEILPQNGPPLTLRAGTTVLHAVARPVAGQDTLPRTGAFRLVDVRYGADAFLPILHALAIAAPPPIRGGGAAAAWDG
AIVRQGPTSTAARRVATEILASDGFDDPIRTVYLRAKALELLAVVLRDMASGVAESLPLRDRKRVVLALHLLEECYGETW
TTARLACRVGLSEKKLQAGFRQVVGASVHTHLRAMRMAAAMAMLGRGMSVTETAYAIGFSSLSHFSKAFKDHSGMSPQIW
AKQHADA
>Mature_327_residues
MRDLAAPHLGIDTPRPILVGRDDRRAPSPAVARGVPPLPGGADPLAGREDITIRVWTGPSETEWQLKGEIPPLVCIGVLL
DGKLEILPQNGPPLTLRAGTTVLHAVARPVAGQDTLPRTGAFRLVDVRYGADAFLPILHALAIAAPPPIRGGGAAAAWDG
AIVRQGPTSTAARRVATEILASDGFDDPIRTVYLRAKALELLAVVLRDMASGVAESLPLRDRKRVVLALHLLEECYGETW
TTARLACRVGLSEKKLQAGFRQVVGASVHTHLRAMRMAAAMAMLGRGMSVTETAYAIGFSSLSHFSKAFKDHSGMSPQIW
AKQHADA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34840; Mature: 34840

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLAAPHLGIDTPRPILVGRDDRRAPSPAVARGVPPLPGGADPLAGREDITIRVWTGPS
CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
ETEWQLKGEIPPLVCIGVLLDGKLEILPQNGPPLTLRAGTTVLHAVARPVAGQDTLPRTG
CCCEEECCCCCHHEEEHHHCCCEEEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
AFRLVDVRYGADAFLPILHALAIAAPPPIRGGGAAAAWDGAIVRQGPTSTAARRVATEIL
CEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCCEEEECCCCHHHHHHHHHHHH
ASDGFDDPIRTVYLRAKALELLAVVLRDMASGVAESLPLRDRKRVVLALHLLEECYGETW
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
TTARLACRVGLSEKKLQAGFRQVVGASVHTHLRAMRMAAAMAMLGRGMSVTETAYAIGFS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SLSHFSKAFKDHSGMSPQIWAKQHADA
HHHHHHHHHHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRDLAAPHLGIDTPRPILVGRDDRRAPSPAVARGVPPLPGGADPLAGREDITIRVWTGPS
CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
ETEWQLKGEIPPLVCIGVLLDGKLEILPQNGPPLTLRAGTTVLHAVARPVAGQDTLPRTG
CCCEEECCCCCHHEEEHHHCCCEEEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
AFRLVDVRYGADAFLPILHALAIAAPPPIRGGGAAAAWDGAIVRQGPTSTAARRVATEIL
CEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCCEEEECCCCHHHHHHHHHHHH
ASDGFDDPIRTVYLRAKALELLAVVLRDMASGVAESLPLRDRKRVVLALHLLEECYGETW
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
TTARLACRVGLSEKKLQAGFRQVVGASVHTHLRAMRMAAAMAMLGRGMSVTETAYAIGFS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SLSHFSKAFKDHSGMSPQIWAKQHADA
HHHHHHHHHHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]