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The map label for this gene is cspE [C]

Identifier: 83592002

GI number: 83592002

Start: 786764

End: 786970

Strand: Reverse

Name: cspE [C]

Synonym: Rru_A0663

Alternate gene names: 83592002

Gene position: 786970-786764 (Counterclockwise)

Preceding gene: 83592003

Following gene: 83592001

Centisome position: 18.08

GC content: 64.25

Gene sequence:

>207_bases
ATGCTTACTGGCACGATTACCTGGTTCGACACCATCAATGGCTATGGTTTCATCCGTCCCGATGACGGCGGTGGCGACAT
CGCCGTTGATATGCCCGCCCTGGACCGCTCCGGCCTGCGCTCGCTGCGCGACGGTCAGCGGGTCGCCTATCGGCTGACCC
GACCCCGTTTCGGCGGCGCCATGGCCGGTATGATCCGGATGGCGTAA

Upstream 100 bases:

>100_bases
GCTTTGTTTTGGCTTTTCCCTCTGACGATTTGATGACGAATCCCGCCTTTCGCGGTGCGTTCGCCTACCCTATGCGCCAG
ACAAAAAGGAGAAAAGCATA

Downstream 100 bases:

>100_bases
CCCTATCCGGGCCTCTCGGCCCGGCTGTTTGGACTCCCCGGACCCCGGGTCCGGGTTATTTTTTCGTCGGGCTTTCGGCT
TGGCGAAGGCTGTCGGGCCC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRFGGAMAGMIRMA

Sequences:

>Translated_68_residues
MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRFGGAMAGMIRMA
>Mature_68_residues
MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRFGGAMAGMIRMA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7437; Mature: 7437

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.4 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRFGGA
CCCEEEEEEECCCCEEEECCCCCCCEEEEECCCCCCHHHHHHCCCCEEEEEECCCCCCCC
MAGMIRMA
CEEEEECC
>Mature Secondary Structure
MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRFGGA
CCCEEEEEEECCCCEEEECCCCCCCEEEEECCCCCCHHHHHHCCCCEEEEEECCCCCCCC
MAGMIRMA
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]