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The map label for this gene is ubiD [H]

Identifier: 83591913

GI number: 83591913

Start: 680792

End: 682315

Strand: Direct

Name: ubiD [H]

Synonym: Rru_A0574

Alternate gene names: 83591913

Gene position: 680792-682315 (Clockwise)

Preceding gene: 83591912

Following gene: 83591914

Centisome position: 15.64

GC content: 65.09

Gene sequence:

>1524_bases
ATGCCGTTCGACAGCCTGCGCGATTTCATGGCCCTGCTCGAGCGCGAGCATAATCTGGTGCGCGTGCGGGCGCCGGTCTC
GCCGGTTCTGGAAATGACCGAGATCCAGACCCGTCTGCTCGACGAAAAAGGGCCGGCCGTTTTGTTCGAAAACGTCCGCC
GCCCCGATGGCAGCGCCTATGCCATGCCGATGCTGGTCAATATGTTCGGCACCGTCGAGCGCGTCGCCCTGGGGATGGAC
CGCACCCCGGCGCAATTGCGCGAGGTCGGCGAGATGCTGGCCTTCCTCAAGCAGCCCGAACCCCCCGGCGGCTGGCGCGA
AGCCCTGGAGATGCTGCCCTTGCTCAAGACCGTGCTGGCGATGAAGCCGCGCACCGTGTCGAAGGCGCCCTGCCAGCAGG
TGGTGCTCAAGGGCAAGGACATCGATCTTGGCCTGCTGCCGATCCAAAGCTGCTGGCCGGGCGAACCGGCGCCGCTGATC
ACCTGGCCGGTGGTGGTGACCCAGGGACCGCAAGCCAGCGGCAAGGGGGCGCGCCGCGAGGACGCCTTCAACCTGGGCAT
CTACCGCATGCAGGTGACCGGGCGCGATACCGCCTTGATGCGCTGGCTCAAGCATCGCGGCGGCGCCCAGCATTGGCAGC
GCTGGAAGCGCGACCACGCCGAGCCGCTGCCCGCCGCCGTGGTCATCGGCGCCGATCCCGGCACCATCCTGGCCGCCGTC
ACCCCCGTTCCCGATACCCTGTCGGAATACCAGTTCGCCGGCCTGCTGCGCGGGCGCAAGGTCGAGCTGGTCGATTGCGT
CAGCGTGCCGCTGAAGGTGCCCGCCACCGCCGAGATCGTGCTTGAAGGCCACGTCATGCTTGACGAATACGGCGACGAGG
GCCCCTACGGCGATCACACCGGCTATTACAACGCCGTCGAATCCTTTCCGGTGTTTCGCATTTCGGCGATCACCATGCGC
AAGGATCCGATCTACCTGTCGACCTTCACCGGCCGGCCGCCCGACGAACCTTCGGTGCTGGGCGAGGCTTTGAACGAGGT
GTTCATTCCGCTGCTCACCCAGCAATTCCCCGAGATCGTCGATTTCTGGCTGCCGCCCGAGGGTTGTAGCTATCGCATCG
CCGTGGTCAGCATGCGCAAGGCCTATCCGGGCCATGCCAAGCGGGTGATGATGGGGGTGTGGTCGTTCCTGCGCCAGTTC
ATGTACACGAAATTCGTCATCGTCGTGGATGACGACATTAACGCCCGCGATTGGAAAGACGTGATGTGGGCGATTTCCAC
CCGCATGGATCCGGCGCGCGATATCACCGTGGTGACCGGCACCCCCATCGATTACCTGGATTTCGCCAGCCCGGAAAGCG
GTTTGGGCGGCAAGATCGGCCTGGACGCCACCGACAAGATGGCCCCGGAAACCCACCGCGAATGGGGCCGCAAGCTGCGG
ATGAGCGACGAGATCATCGAGACCGTCACCCGCAAATGGACCGATTACGGCCTGCCCGGCAGTGGCAAGCCGATCTGGAA
GTAG

Upstream 100 bases:

>100_bases
CGGGCGGCTTTGCGCGGGAAATCCAGGCATATGGCTTGACGCTGGGAAGGGGGGTCGGTTAAGTGCCCCTTCGTTTTCGA
GCCGCCCTGGAGGTGCGATC

Downstream 100 bases:

>100_bases
TCCGTCCTGGCGCCATAGTTTTCCGATTGCCGCCGGCCAGCGCGCGGCCCACCTAACTAAGGGCACGGGCGCGACGTCCC
GGCCGCGCCCGTGCGTCTTT

Product: 3-octaprenyl-4hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MPFDSLRDFMALLEREHNLVRVRAPVSPVLEMTEIQTRLLDEKGPAVLFENVRRPDGSAYAMPMLVNMFGTVERVALGMD
RTPAQLREVGEMLAFLKQPEPPGGWREALEMLPLLKTVLAMKPRTVSKAPCQQVVLKGKDIDLGLLPIQSCWPGEPAPLI
TWPVVVTQGPQASGKGARREDAFNLGIYRMQVTGRDTALMRWLKHRGGAQHWQRWKRDHAEPLPAAVVIGADPGTILAAV
TPVPDTLSEYQFAGLLRGRKVELVDCVSVPLKVPATAEIVLEGHVMLDEYGDEGPYGDHTGYYNAVESFPVFRISAITMR
KDPIYLSTFTGRPPDEPSVLGEALNEVFIPLLTQQFPEIVDFWLPPEGCSYRIAVVSMRKAYPGHAKRVMMGVWSFLRQF
MYTKFVIVVDDDINARDWKDVMWAISTRMDPARDITVVTGTPIDYLDFASPESGLGGKIGLDATDKMAPETHREWGRKLR
MSDEIIETVTRKWTDYGLPGSGKPIWK

Sequences:

>Translated_507_residues
MPFDSLRDFMALLEREHNLVRVRAPVSPVLEMTEIQTRLLDEKGPAVLFENVRRPDGSAYAMPMLVNMFGTVERVALGMD
RTPAQLREVGEMLAFLKQPEPPGGWREALEMLPLLKTVLAMKPRTVSKAPCQQVVLKGKDIDLGLLPIQSCWPGEPAPLI
TWPVVVTQGPQASGKGARREDAFNLGIYRMQVTGRDTALMRWLKHRGGAQHWQRWKRDHAEPLPAAVVIGADPGTILAAV
TPVPDTLSEYQFAGLLRGRKVELVDCVSVPLKVPATAEIVLEGHVMLDEYGDEGPYGDHTGYYNAVESFPVFRISAITMR
KDPIYLSTFTGRPPDEPSVLGEALNEVFIPLLTQQFPEIVDFWLPPEGCSYRIAVVSMRKAYPGHAKRVMMGVWSFLRQF
MYTKFVIVVDDDINARDWKDVMWAISTRMDPARDITVVTGTPIDYLDFASPESGLGGKIGLDATDKMAPETHREWGRKLR
MSDEIIETVTRKWTDYGLPGSGKPIWK
>Mature_506_residues
PFDSLRDFMALLEREHNLVRVRAPVSPVLEMTEIQTRLLDEKGPAVLFENVRRPDGSAYAMPMLVNMFGTVERVALGMDR
TPAQLREVGEMLAFLKQPEPPGGWREALEMLPLLKTVLAMKPRTVSKAPCQQVVLKGKDIDLGLLPIQSCWPGEPAPLIT
WPVVVTQGPQASGKGARREDAFNLGIYRMQVTGRDTALMRWLKHRGGAQHWQRWKRDHAEPLPAAVVIGADPGTILAAVT
PVPDTLSEYQFAGLLRGRKVELVDCVSVPLKVPATAEIVLEGHVMLDEYGDEGPYGDHTGYYNAVESFPVFRISAITMRK
DPIYLSTFTGRPPDEPSVLGEALNEVFIPLLTQQFPEIVDFWLPPEGCSYRIAVVSMRKAYPGHAKRVMMGVWSFLRQFM
YTKFVIVVDDDINARDWKDVMWAISTRMDPARDITVVTGTPIDYLDFASPESGLGGKIGLDATDKMAPETHREWGRKLRM
SDEIIETVTRKWTDYGLPGSGKPIWK

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=505, Percent_Identity=59.4059405940594, Blast_Score=613, Evalue=1e-176,
Organism=Saccharomyces cerevisiae, GI6320748, Length=449, Percent_Identity=25.3897550111359, Blast_Score=108, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 56780; Mature: 56648

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFDSLRDFMALLEREHNLVRVRAPVSPVLEMTEIQTRLLDEKGPAVLFENVRRPDGSAY
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
AMPMLVNMFGTVERVALGMDRTPAQLREVGEMLAFLKQPEPPGGWREALEMLPLLKTVLA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
MKPRTVSKAPCQQVVLKGKDIDLGLLPIQSCWPGEPAPLITWPVVVTQGPQASGKGARRE
CCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
DAFNLGIYRMQVTGRDTALMRWLKHRGGAQHWQRWKRDHAEPLPAAVVIGADPGTILAAV
CCEECCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
TPVPDTLSEYQFAGLLRGRKVELVDCVSVPLKVPATAEIVLEGHVMLDEYGDEGPYGDHT
CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECEEEEECCCCCCCCCCCC
GYYNAVESFPVFRISAITMRKDPIYLSTFTGRPPDEPSVLGEALNEVFIPLLTQQFPEIV
CHHHHHHCCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DFWLPPEGCSYRIAVVSMRKAYPGHAKRVMMGVWSFLRQFMYTKFVIVVDDDINARDWKD
HHCCCCCCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHH
VMWAISTRMDPARDITVVTGTPIDYLDFASPESGLGGKIGLDATDKMAPETHREWGRKLR
HHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHCC
MSDEIIETVTRKWTDYGLPGSGKPIWK
CHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PFDSLRDFMALLEREHNLVRVRAPVSPVLEMTEIQTRLLDEKGPAVLFENVRRPDGSAY
CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
AMPMLVNMFGTVERVALGMDRTPAQLREVGEMLAFLKQPEPPGGWREALEMLPLLKTVLA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
MKPRTVSKAPCQQVVLKGKDIDLGLLPIQSCWPGEPAPLITWPVVVTQGPQASGKGARRE
CCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
DAFNLGIYRMQVTGRDTALMRWLKHRGGAQHWQRWKRDHAEPLPAAVVIGADPGTILAAV
CCEECCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
TPVPDTLSEYQFAGLLRGRKVELVDCVSVPLKVPATAEIVLEGHVMLDEYGDEGPYGDHT
CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECEEEEECCCCCCCCCCCC
GYYNAVESFPVFRISAITMRKDPIYLSTFTGRPPDEPSVLGEALNEVFIPLLTQQFPEIV
CHHHHHHCCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DFWLPPEGCSYRIAVVSMRKAYPGHAKRVMMGVWSFLRQFMYTKFVIVVDDDINARDWKD
HHCCCCCCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHH
VMWAISTRMDPARDITVVTGTPIDYLDFASPESGLGGKIGLDATDKMAPETHREWGRKLR
HHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHCC
MSDEIIETVTRKWTDYGLPGSGKPIWK
CHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA