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The map label for this gene is cydA [H]

Identifier: 83591899

GI number: 83591899

Start: 662187

End: 663617

Strand: Direct

Name: cydA [H]

Synonym: Rru_A0560

Alternate gene names: 83591899

Gene position: 662187-663617 (Clockwise)

Preceding gene: 83591896

Following gene: 83591900

Centisome position: 15.21

GC content: 64.92

Gene sequence:

>1431_bases
ATGCTTGATGGCTGGCCCGACGCGACGCTGCTGGCACGGATCCAGTTCGCTTTCACGGTTTCCTTTCACATCATCTTTCC
GGCCTTCACCATCGGCCTTGCCAGCTATCTGGCGGTGCTCGAGGCGACGTGGCTGATCACCAAGCGCCGGGTGTTTCTCG
ATCTCTATAAGCACTGGGTTCGCGTCTTCGCCCTGACCTTTGGCATGGGCGTGGTGTCCGGGCTGGTGATGAGCTATCAG
TTCGGCACCAACTGGGGGCCCTTCGCCAAGGCCACCGGCTCGATCCTGGGGCCCTTGATGGGCTATGAGGTGCTGACCGC
CTTTTTCCTGGAGGCGGGGTTCCTTGGCGTGATGCTGTTCGGGCTGACGCGGGTTGGCCCCCGCCTGCATTTCTTCGCCA
CCCTGATGGTCGCCGTCGGCACGCTGATCTCGGCCTTCTGGATCCTGGCGGCCAATTCCTGGATGCATACCCCGACCGGC
CATATCCTGGAAAACGGCATCTTCCGACCCGGCGACTGGATGGAGATCGTCTTCAATCCCAGTTTCCCCTATCGTCTGGT
CCATATGGTCACGGCGGCCTATCTGACCACGGCCCTGGTGGTGGGGGCGGCGGCGGCGCGGCGTTTGCTGCTGCTGCGCA
AAAGCGGCGAAGGCCGTAACGATCCGGGCAAGGGCGAGGCCTCGCGGCTGGCTTTCGCCATGGCCATGGGCATGATCGCC
CTGACCGCGCCGCTTCAGGCCTTTCTCGGCGATCTGCATGGCCTCAACACCTTGGAGCATCAGCCGGCCAAGATCGCGGC
CATGGAAGGCCATTGGCAGGAAACCATCTCCCCGGCGCCGCTGATCTTGTTTGGCCTGCCCGACGCCGAGGCCGAGACGA
CGCGCTACGCCGTCGAGATCCCCTATCTCGGCTCGTTGATCCTGACCCATTCCCTGGACGGCGCGCTTCAGGGGCTCAAG
GCCTTTCCCGAGGCCGATCGCCCGCCGGTGGTCATTCCCTTCTGGTCATTCCGGGTGATGGTCGGCTTGGGCCTGCTGAT
GATCGCCCTGGGCGCCCTGGCCGTTTGGGCCCGGCTGCGCGGTAGGCTTTACGACAGCCCGGCGCTGTATCGCTTCGCCC
TGCTGATGGGACCGGCCGGTTTCATCGCCGTTCTCGCCGGCTGGGTGACGACCGAGGTCGGTCGCCAGCCCTTTGTCGTC
TATGGGCTGATGCGTACAAGCGATATGGTCTCGCCGATCGGCGCCCCCGGGGTGGCGGCATCGCTGCTGGCCTTCATCGT
CGTGTATTTCGCCGTCTTCGGGGTGGGCATCCGCTATCTGCTCAAGATGATGGCCCAGCCGGTGGCCCGCTCCAAGGATG
ATCCCGTCCCCTTCACCCGCGCCGCCGGCATCACCCCGGGTCCGGCCGAGGAGGCTCGCCATGTCGATTGA

Upstream 100 bases:

>100_bases
GCTTTGCCAGTTCCGCGCGCATCCCCGGCCAAAACCGATCGTTGCCATAGCGAGGATGGTCCCTATCTAGGAGGGGCACC
CGCACGGCTTGGAGGATGGC

Downstream 100 bases:

>100_bases
CCTGCCTTTGATCTGGGGGATGCTGATCGCTTTTGCCGTCTTCGCCTATGTGGTGCTCGATGGCTTCGACCTGGGCATCG
GCATCCTGTTTCCCTTTCTG

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MLDGWPDATLLARIQFAFTVSFHIIFPAFTIGLASYLAVLEATWLITKRRVFLDLYKHWVRVFALTFGMGVVSGLVMSYQ
FGTNWGPFAKATGSILGPLMGYEVLTAFFLEAGFLGVMLFGLTRVGPRLHFFATLMVAVGTLISAFWILAANSWMHTPTG
HILENGIFRPGDWMEIVFNPSFPYRLVHMVTAAYLTTALVVGAAAARRLLLLRKSGEGRNDPGKGEASRLAFAMAMGMIA
LTAPLQAFLGDLHGLNTLEHQPAKIAAMEGHWQETISPAPLILFGLPDAEAETTRYAVEIPYLGSLILTHSLDGALQGLK
AFPEADRPPVVIPFWSFRVMVGLGLLMIALGALAVWARLRGRLYDSPALYRFALLMGPAGFIAVLAGWVTTEVGRQPFVV
YGLMRTSDMVSPIGAPGVAASLLAFIVVYFAVFGVGIRYLLKMMAQPVARSKDDPVPFTRAAGITPGPAEEARHVD

Sequences:

>Translated_476_residues
MLDGWPDATLLARIQFAFTVSFHIIFPAFTIGLASYLAVLEATWLITKRRVFLDLYKHWVRVFALTFGMGVVSGLVMSYQ
FGTNWGPFAKATGSILGPLMGYEVLTAFFLEAGFLGVMLFGLTRVGPRLHFFATLMVAVGTLISAFWILAANSWMHTPTG
HILENGIFRPGDWMEIVFNPSFPYRLVHMVTAAYLTTALVVGAAAARRLLLLRKSGEGRNDPGKGEASRLAFAMAMGMIA
LTAPLQAFLGDLHGLNTLEHQPAKIAAMEGHWQETISPAPLILFGLPDAEAETTRYAVEIPYLGSLILTHSLDGALQGLK
AFPEADRPPVVIPFWSFRVMVGLGLLMIALGALAVWARLRGRLYDSPALYRFALLMGPAGFIAVLAGWVTTEVGRQPFVV
YGLMRTSDMVSPIGAPGVAASLLAFIVVYFAVFGVGIRYLLKMMAQPVARSKDDPVPFTRAAGITPGPAEEARHVD
>Mature_476_residues
MLDGWPDATLLARIQFAFTVSFHIIFPAFTIGLASYLAVLEATWLITKRRVFLDLYKHWVRVFALTFGMGVVSGLVMSYQ
FGTNWGPFAKATGSILGPLMGYEVLTAFFLEAGFLGVMLFGLTRVGPRLHFFATLMVAVGTLISAFWILAANSWMHTPTG
HILENGIFRPGDWMEIVFNPSFPYRLVHMVTAAYLTTALVVGAAAARRLLLLRKSGEGRNDPGKGEASRLAFAMAMGMIA
LTAPLQAFLGDLHGLNTLEHQPAKIAAMEGHWQETISPAPLILFGLPDAEAETTRYAVEIPYLGSLILTHSLDGALQGLK
AFPEADRPPVVIPFWSFRVMVGLGLLMIALGALAVWARLRGRLYDSPALYRFALLMGPAGFIAVLAGWVTTEVGRQPFVV
YGLMRTSDMVSPIGAPGVAASLLAFIVVYFAVFGVGIRYLLKMMAQPVARSKDDPVPFTRAAGITPGPAEEARHVD

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=519, Percent_Identity=30.8285163776493, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI87081779, Length=490, Percent_Identity=30.4081632653061, Blast_Score=217, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51766; Mature: 51766

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]