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The map label for this gene is ygbT [H]

Identifier: 83591687

GI number: 83591687

Start: 419071

End: 419952

Strand: Direct

Name: ygbT [H]

Synonym: Rru_A0347

Alternate gene names: 83591687

Gene position: 419071-419952 (Clockwise)

Preceding gene: 83591686

Following gene: 83591688

Centisome position: 9.63

GC content: 65.08

Gene sequence:

>882_bases
ATGCTGAGCGGAAGGCTGGGACTTGAAAAAGCGCGCATTCCCCATGCCGACCGCCATGGGCTGGTCTGGCTTGATCGCGG
CCGTCTGGAGGTCGAAGACGGCTGTCTGCGCTTTGTGACCGCCGGTGGCGGTGAACTGGCGGCGGGGGATTATCAGATCC
CCCATCAGGCGGTATCGATCATCCTGCTGGGGCCGGGGTCAAGCGTTACCCATGATGCGCTGCGGCTGCTGGCCCGCCAT
GGCTGCGCCTTGGCCGCCATTGGCCAGGGGGCCGTACGGTTTTATACCGCGCCGCCCCTGATGCCCGACAGTTCCGCCCT
GGCGCGGGCGCAGGTAACGCTTTGGGCCGATCCGAAGACCCGCATGGAGGTGGCGCGCGCCATGTATGCCATGCGCTTTG
GCGAGATCGTGCGAACGCGCGACATCGAGGTTCTGCGCGGGCAGGAAGGCGCCCGCATCAAGCGAAGCTACCAGCTGGCG
GCGGAACGCTATGGCATACCCTGGCGGGGGCGAAGCTATGATCGGGCCGATCCCGAGGCCGGGGATGAGGCCAATCAGGC
GATCAACCACGCCGCAACGGCCATGACCGCCGCCGCCTCGGTCGCCGTGGCGGCGGTGGGGGCGATCCCCCAACTGGGGT
TCGTCCACGAGGATTCCGGCCAGTCCTTCGTTCTCGATATCGCCGATCTTTATCGCCACGATATCACCCTGGATATCGCC
TTTGGCGCCGTTAAGGAGGCGGAAAAATCCGGTGATCCCCTTGAGCGACTCACCCGCCAGCGGGCGGCCAAGCTGTTTCG
CCAACGCGGCGTTATTCCCTCGATGATCGACAGGATCAAAACGCTTCTGGGTCTTGGGGCCGAGACCGAGGAGATCGCTT
GA

Upstream 100 bases:

>100_bases
GGGGCGAAATTCGCCGGGCATCTGGCGTCTGGCCTTGGCCGACATACCGCTTACGGCTATGGCATGATGCTTCTGCGTCC
GGCGCGATAGGGGACGGATC

Downstream 100 bases:

>100_bases
TGCCGATGGTTGTGGTCGTTACCCGCAATGTCGAGGCGCGCTACCGGGGGTTCCTGGGCTCGGCCATGCTTGAACTGGCG
CCCGGCGTCTATGCGCAGCC

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLSGRLGLEKARIPHADRHGLVWLDRGRLEVEDGCLRFVTAGGGELAAGDYQIPHQAVSIILLGPGSSVTHDALRLLARH
GCALAAIGQGAVRFYTAPPLMPDSSALARAQVTLWADPKTRMEVARAMYAMRFGEIVRTRDIEVLRGQEGARIKRSYQLA
AERYGIPWRGRSYDRADPEAGDEANQAINHAATAMTAAASVAVAAVGAIPQLGFVHEDSGQSFVLDIADLYRHDITLDIA
FGAVKEAEKSGDPLERLTRQRAAKLFRQRGVIPSMIDRIKTLLGLGAETEEIA

Sequences:

>Translated_293_residues
MLSGRLGLEKARIPHADRHGLVWLDRGRLEVEDGCLRFVTAGGGELAAGDYQIPHQAVSIILLGPGSSVTHDALRLLARH
GCALAAIGQGAVRFYTAPPLMPDSSALARAQVTLWADPKTRMEVARAMYAMRFGEIVRTRDIEVLRGQEGARIKRSYQLA
AERYGIPWRGRSYDRADPEAGDEANQAINHAATAMTAAASVAVAAVGAIPQLGFVHEDSGQSFVLDIADLYRHDITLDIA
FGAVKEAEKSGDPLERLTRQRAAKLFRQRGVIPSMIDRIKTLLGLGAETEEIA
>Mature_293_residues
MLSGRLGLEKARIPHADRHGLVWLDRGRLEVEDGCLRFVTAGGGELAAGDYQIPHQAVSIILLGPGSSVTHDALRLLARH
GCALAAIGQGAVRFYTAPPLMPDSSALARAQVTLWADPKTRMEVARAMYAMRFGEIVRTRDIEVLRGQEGARIKRSYQLA
AERYGIPWRGRSYDRADPEAGDEANQAINHAATAMTAAASVAVAAVGAIPQLGFVHEDSGQSFVLDIADLYRHDITLDIA
FGAVKEAEKSGDPLERLTRQRAAKLFRQRGVIPSMIDRIKTLLGLGAETEEIA

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=277, Percent_Identity=34.6570397111913, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 31742; Mature: 31742

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSGRLGLEKARIPHADRHGLVWLDRGRLEVEDGCLRFVTAGGGELAAGDYQIPHQAVSI
CCCCCCCCHHHCCCCCCCCCEEEEECCCEEECCCEEEEEECCCCCCCCCCCCCCCCCEEE
ILLGPGSSVTHDALRLLARHGCALAAIGQGAVRFYTAPPLMPDSSALARAQVTLWADPKT
EEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCHHHEEEEEEEECCHH
RMEVARAMYAMRFGEIVRTRDIEVLRGQEGARIKRSYQLAAERYGIPWRGRSYDRADPEA
HHHHHHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GDEANQAINHAATAMTAAASVAVAAVGAIPQLGFVHEDSGQSFVLDIADLYRHDITLDIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEHHHHHHHCEEEEEE
FGAVKEAEKSGDPLERLTRQRAAKLFRQRGVIPSMIDRIKTLLGLGAETEEIA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MLSGRLGLEKARIPHADRHGLVWLDRGRLEVEDGCLRFVTAGGGELAAGDYQIPHQAVSI
CCCCCCCCHHHCCCCCCCCCEEEEECCCEEECCCEEEEEECCCCCCCCCCCCCCCCCEEE
ILLGPGSSVTHDALRLLARHGCALAAIGQGAVRFYTAPPLMPDSSALARAQVTLWADPKT
EEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCHHHEEEEEEEECCHH
RMEVARAMYAMRFGEIVRTRDIEVLRGQEGARIKRSYQLAAERYGIPWRGRSYDRADPEA
HHHHHHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GDEANQAINHAATAMTAAASVAVAAVGAIPQLGFVHEDSGQSFVLDIADLYRHDITLDIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEHHHHHHHCEEEEEE
FGAVKEAEKSGDPLERLTRQRAAKLFRQRGVIPSMIDRIKTLLGLGAETEEIA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]