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The map label for this gene is ygcJ [H]

Identifier: 83591684

GI number: 83591684

Start: 416445

End: 417590

Strand: Direct

Name: ygcJ [H]

Synonym: Rru_A0344

Alternate gene names: 83591684

Gene position: 416445-417590 (Clockwise)

Preceding gene: 83591683

Following gene: 83591685

Centisome position: 9.57

GC content: 62.3

Gene sequence:

>1146_bases
ATGACCCCGTCCCGTTTTCTGCAAATCCACAGTTTGCATTCCTATACGGCGGCGCTTTTGAACCGGGATGATTCCGGTCT
GGCCAAGCGGCTGACCTATGGCGGATCAAACCGCACCCGCATTTCCTCGCAATGCCTGAAGCGTCACTGGCGGATGGCCG
AGCACGACCCCCATGCCCTGCAGACCCTGGGGGGATACGTTGGCTCGTTCCGCTCGCGCGAATTGGTTACGGATCTGGTG
ATCAAGCCGCTTGAGGGGCGTTATCCCCAGGACATCCTTGATGTCCTGGAGCCGGAGTTTCAGAAACTGGTTTATGGGGA
CAAGGCGGACAAGGGCAAGAAAAGCCGCCAGACCCTGTTGTTGGGACAGCCCGAACTGGCGTGGCTGGCCCGGCGGGCGG
AAGAACTCGCCGCCGGGGCAAACGATGCGAAAGCCTTGCAAAAGGCCGTCGCCGATTGGCGGAAAGACGCGAATTTCAAG
GCGATGAGCGAGAACGCGGCGCTGCCCGGCGGTCTTGTCGCCGCCTTGTTCGGCCGCATGGTGACATCCGATCCGGCGGC
CAATATCGACGCGCCGGTGCATGTCGCCCATGCCTTCACCGTTCATGCCGAAGAGGCGGAGGGCGATTACTTCACCGCCG
TTGATGATCTGAAAAAAGACGAGAGCGATAGCGGCGCCGATACGATCCAGGAAACCGAACTAACCTCGGGCCTGTTCTAT
GGCTATGTGGTGATCGATCTGCCCGGCCTGATCGGTAATTGCGGCGGTGACAAGGAGATCGCCGCCCAAGTGGTGAATAA
TCTTGTCTATCTCATCGCCGAAGTTTCCCCGGGCGCCAAGCTGGGCTCCACCGCGCCCTATGGCCGCGCCGATCTGATGC
TGATCGAAGCGGGCGACCGCCAGCCCCGCAGTCTGGCGACGGCCTATCGCAAGGCGATCGCCCCTGATCGCGAACAGGCG
GTGGCGGCTCTGGACGGCTGTTTGGCCAAGCTTGATGCCACCTATGAGACGGGGGAGGCCCGGCGCTATCTGTCGCTGGC
CGAAACGCCCTTGACCGGACCGGCGACCAGCGGCTTGGAAAAGCTGTCGCTCAAGGCCCTGGCGGACTGGACGGCGAGCC
GGGTGAAGGAGGCTCCCGATGCCTGA

Upstream 100 bases:

>100_bases
GTTTCCAGAAAGCAAAACCTCCGCCCAAGCCCTGGCGACCAGCTATTACCGGCGGCTTGATTCCGCTTTACGCACCGACA
AGACATAAGGAAGCCGACGA

Downstream 100 bases:

>100_bases
GCATCGCTGGCTGATCGTGCATCTGGAAGCGCCGTTGCTGGCTTTCGGTGGGGTGGCCATCGATAACGTGGGCGTGACCC
GCGATTTTCCCGCCGCATCG

Product: CRISPR-associated Cse4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTPSRFLQIHSLHSYTAALLNRDDSGLAKRLTYGGSNRTRISSQCLKRHWRMAEHDPHALQTLGGYVGSFRSRELVTDLV
IKPLEGRYPQDILDVLEPEFQKLVYGDKADKGKKSRQTLLLGQPELAWLARRAEELAAGANDAKALQKAVADWRKDANFK
AMSENAALPGGLVAALFGRMVTSDPAANIDAPVHVAHAFTVHAEEAEGDYFTAVDDLKKDESDSGADTIQETELTSGLFY
GYVVIDLPGLIGNCGGDKEIAAQVVNNLVYLIAEVSPGAKLGSTAPYGRADLMLIEAGDRQPRSLATAYRKAIAPDREQA
VAALDGCLAKLDATYETGEARRYLSLAETPLTGPATSGLEKLSLKALADWTASRVKEAPDA

Sequences:

>Translated_381_residues
MTPSRFLQIHSLHSYTAALLNRDDSGLAKRLTYGGSNRTRISSQCLKRHWRMAEHDPHALQTLGGYVGSFRSRELVTDLV
IKPLEGRYPQDILDVLEPEFQKLVYGDKADKGKKSRQTLLLGQPELAWLARRAEELAAGANDAKALQKAVADWRKDANFK
AMSENAALPGGLVAALFGRMVTSDPAANIDAPVHVAHAFTVHAEEAEGDYFTAVDDLKKDESDSGADTIQETELTSGLFY
GYVVIDLPGLIGNCGGDKEIAAQVVNNLVYLIAEVSPGAKLGSTAPYGRADLMLIEAGDRQPRSLATAYRKAIAPDREQA
VAALDGCLAKLDATYETGEARRYLSLAETPLTGPATSGLEKLSLKALADWTASRVKEAPDA
>Mature_380_residues
TPSRFLQIHSLHSYTAALLNRDDSGLAKRLTYGGSNRTRISSQCLKRHWRMAEHDPHALQTLGGYVGSFRSRELVTDLVI
KPLEGRYPQDILDVLEPEFQKLVYGDKADKGKKSRQTLLLGQPELAWLARRAEELAAGANDAKALQKAVADWRKDANFKA
MSENAALPGGLVAALFGRMVTSDPAANIDAPVHVAHAFTVHAEEAEGDYFTAVDDLKKDESDSGADTIQETELTSGLFYG
YVVIDLPGLIGNCGGDKEIAAQVVNNLVYLIAEVSPGAKLGSTAPYGRADLMLIEAGDRQPRSLATAYRKAIAPDREQAV
AALDGCLAKLDATYETGEARRYLSLAETPLTGPATSGLEKLSLKALADWTASRVKEAPDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=382, Percent_Identity=30.3664921465969, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 41151; Mature: 41020

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSRFLQIHSLHSYTAALLNRDDSGLAKRLTYGGSNRTRISSQCLKRHWRMAEHDPHAL
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHH
QTLGGYVGSFRSRELVTDLVIKPLEGRYPQDILDVLEPEFQKLVYGDKADKGKKSRQTLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCCCCCCHHCCEEE
LGQPELAWLARRAEELAAGANDAKALQKAVADWRKDANFKAMSENAALPGGLVAALFGRM
ECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHH
VTSDPAANIDAPVHVAHAFTVHAEEAEGDYFTAVDDLKKDESDSGADTIQETELTSGLFY
HCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHH
GYVVIDLPGLIGNCGGDKEIAAQVVNNLVYLIAEVSPGAKLGSTAPYGRADLMLIEAGDR
EEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCC
QPRSLATAYRKAIAPDREQAVAALDGCLAKLDATYETGEARRYLSLAETPLTGPATSGLE
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
KLSLKALADWTASRVKEAPDA
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPSRFLQIHSLHSYTAALLNRDDSGLAKRLTYGGSNRTRISSQCLKRHWRMAEHDPHAL
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHH
QTLGGYVGSFRSRELVTDLVIKPLEGRYPQDILDVLEPEFQKLVYGDKADKGKKSRQTLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCCCCCCHHCCEEE
LGQPELAWLARRAEELAAGANDAKALQKAVADWRKDANFKAMSENAALPGGLVAALFGRM
ECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHH
VTSDPAANIDAPVHVAHAFTVHAEEAEGDYFTAVDDLKKDESDSGADTIQETELTSGLFY
HCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHH
GYVVIDLPGLIGNCGGDKEIAAQVVNNLVYLIAEVSPGAKLGSTAPYGRADLMLIEAGDR
EEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCC
QPRSLATAYRKAIAPDREQAVAALDGCLAKLDATYETGEARRYLSLAETPLTGPATSGLE
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
KLSLKALADWTASRVKEAPDA
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]