| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is ygcB [H]
Identifier: 83591680
GI number: 83591680
Start: 411275
End: 413932
Strand: Direct
Name: ygcB [H]
Synonym: Rru_A0340
Alternate gene names: 83591680
Gene position: 411275-413932 (Clockwise)
Preceding gene: 83591679
Following gene: 83591681
Centisome position: 9.45
GC content: 64.41
Gene sequence:
>2658_bases ATGCGCGGTATTGGGGGCTGGGCTTTGAACGATGTCACCGGTTCGGCGGCAGAGCAAAACCAAGAAAGCCGCAAGGGGCT TTATGGCGCGCCTTGGGGAAAATCGAGGGACGGGGAAAGCCATCATCTGGCCCATCACTGCGCCGATGTGGCAGCCTGCT TCGAGGCCATGGCCGCGCTGCCCGGAGTGCGGAGCCGATTGGAACGGGCCGCAGGCGGTCCCCTTTCCGAGGTCGATATC GCCCGCCTTGCCGTTCTGGTTTTCCTTCACGACATAGGCAAGCTGCATCCGGGGTTTCAAGCGAAGGCTTGGCCGGAGGG CTTATGGACGGGGCCCCGGCACGGACATATGCGGGAAGGCGTGGAGATTTTCCAGCACCAAGCCCCCCCGGACATTGTCC GCAGCCTGCATCTGGAAAAGCTGATCGAGTGGGGTGTCGATTGGAATCTGCTTTTCTCCGTCCTTGCCCACCATGGTCGT CCGGTTTCCATGGAAGGAGGACGCCCCCCTTGTTGGCGGGCCGTGGCGAAAGCCGGCTATGACCCTGGTGCGGCTTCGGC TGAAGTCGGCGGTCTCATCCCCCGTTGGTTTGCCGGCGCCTTTGTCCAAGACGGTCGGCCGCTTCCCTCGATGGTGGGGT TTGCCCATCTGTTTTGTGGCTTTGTCTCGCTTGCCGACTGGTTGGGGTCGACAAGGGCGGTCTTCCCGTTCAAGGCCGAG CTTGATGTCGATTACATGGAGAAGGCCCGCAAAAAAGCCGGCGCTGCGGTGGCGGCCATTGGCCTCGATCCCCGCGCCCT CCAGCGTAAGGCGGCGGGGCGGGCCGATTTCGCCACCCTTACCGGCATAGACACCCCACGGCCCCAGCAACAGCTGGTCG GCGCGTTTCCCCTTGCCGAACCCCTTGTCATTCTTGAAGCCGAAACCGGATCGGGCAAGACGGAAGCCGCGTTGTGGCGT TTCGTCCTGCTGTTTGCGGCGGGAAAGGTGGACAGCCTCTATTTCGCCCTCCCCACGCGCGCCGCGGCCATCCAACTCCA CGCCCGGGTGAACAAGGCGATGGCGCGGGTCTTTGGCGCCGATGCGCCGGAGGCCGTTCTCGCGGTTCCCGGCTATCTGA AATCCGGGGTGGTTGGCGGGCATGCCCTGCCTGACTGGGGGGTGCGCTGGGATGACGATGGCGGTCTTGACGAGAGCCGC CTTCTGGCCCGGTGGGCGGCGGAAAGCGCCAAACGCCATCTGGCGGCGACCATCGCCGTTGGAACCGTCGATCAGGCCAT GCTCGCCGCTTTGCAGGTCAAGCATGCCCATCTCCGGGGGGCCGCCCTTTCGCGCAGCCTGCTAGTAATAGACGAAGTTC ATGCCTCTGATCGCTATATGGTTGAAGTACAGACCCATCTGCTCGCCATGCATCTCGGGCACGGTGGTCAGGCCATGCTG ATGTCGGCGACGCTGGGATCGCTGGCACGGACGAAGTGGCTGGGGCGCAAGACTTCCCCGTCTTTTGAGGAGGCGGTGGC CACGCCCTATCCGGCCGTTTGGGGCAAGGGAGAGGTCGCGCCGCGCGGGGGGATCGGCAAGGGCGGGGAGAAATCCGTCG CCATCGGGCTTGTTCCGTCGTGGACGGCGGAAACGGCGGCGGCCCTGGCGATCGACGCGGCGCGCTCCGGGGCGCGGGTG CTTGTCGTGCGCAACACCGTGCGGGCGGCGATTTCAACCTTCGACCGGGTCCGGCAAGCCGGCGGCGAGGATTTGTTGCT GACGGTGGCCAAGGGTCCGGCTTTGCATCACGGCCGGTTCGCCCCCGAGGATCGCGCCCTGCTTGATGGGGCGGTGGAGG CGGCCTTGTCTGTTGATCAGGCAACGCGCACACCGGGCGGGCGGATCGTCATCGGAACGCAAACGCTCGAACAAAGCCTT GATATCGATGCCGACTTTCTGATCACGGACCTGTGTCCCGTCGATGTGCTGCTGCAACGCATCGGGCGGTTGCATCGCCA TGCCCTGAGCCGGCCGTCCGGCTTCGAGGTCCCCCACTGTCGGGTTCTGATGCCCGAGCAGGGATTGGAGATATTTCTGC CTCCCTTTTTCGAGAACGGGCTGGGGGGATGGGACGAGCGGGGTGTTCTGAACGGCATCTACCGCGACCTCTCCGTGCTT GAACTGACCCGGCGCCTGATCGCGGCTTACCCCGAATGGCGCATCCCGGCGATGAACCGGTTTCTGGTCGAAAGCGCAAC CCATCCCGAGCGCATCGAGGCGCTGCATAGGGAACTGGGGCGGCCCTGGGAAACCTATTGGGCCAATGTATGTGGCAAGG ACATCGCCGATGCCGGCGCGGCCAGAAACATCGCCCTGCCGATCGGCACGCCCTTCGCCGACATGAGGTACCCAGACCCC GACAAGGAAGAGAGAATCCGCACGAGACTGGGGGCGGAGGGAGCCCGGATTCTTTTTTCCGGCCCGGTCTGCGGCCCCTT CGGAGTCGAGATCAGTGGCGTGACCCTGCCGCCCCCCTGGTCCCATGGGATCGACGGCGGGACGGTGGTGGCGCCGATCG CTTTGGATGGGGTGTTGCATTTCCAAGCCGGAGGGACCAAATTCGAGTACGGACGCCGCGGTACGGTTAGATCTTACAGG TTACTTGAAATATCCTGA
Upstream 100 bases:
>100_bases AAACTCGACCCCAGCAAGGAATGCCACCCTATGGTCGAAGCTATTGCGGATAGCCACAATGTGGTCTGCTCTTGCTTCAG GGGAAAGATGAGCGCGAAGG
Downstream 100 bases:
>100_bases GCGGATCCCATATCGTGTTCGATGCCACTTTTGCATGGAGTTCCAATCATGGGGTTCGGTATGTTCACGTGTGTCGAGAC GGTCTTCCGGTTGCCGCGAT
Product: CRISPR-associated helicase Cas3 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 885; Mature: 885
Protein sequence:
>885_residues MRGIGGWALNDVTGSAAEQNQESRKGLYGAPWGKSRDGESHHLAHHCADVAACFEAMAALPGVRSRLERAAGGPLSEVDI ARLAVLVFLHDIGKLHPGFQAKAWPEGLWTGPRHGHMREGVEIFQHQAPPDIVRSLHLEKLIEWGVDWNLLFSVLAHHGR PVSMEGGRPPCWRAVAKAGYDPGAASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAE LDVDYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQLVGAFPLAEPLVILEAETGSGKTEAALWR FVLLFAAGKVDSLYFALPTRAAAIQLHARVNKAMARVFGADAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESR LLARWAAESAKRHLAATIAVGTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHLGHGGQAML MSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKGEVAPRGGIGKGGEKSVAIGLVPSWTAETAAALAIDAARSGARV LVVRNTVRAAISTFDRVRQAGGEDLLLTVAKGPALHHGRFAPEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSL DIDADFLITDLCPVDVLLQRIGRLHRHALSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLGGWDERGVLNGIYRDLSVL ELTRRLIAAYPEWRIPAMNRFLVESATHPERIEALHRELGRPWETYWANVCGKDIADAGAARNIALPIGTPFADMRYPDP DKEERIRTRLGAEGARILFSGPVCGPFGVEISGVTLPPPWSHGIDGGTVVAPIALDGVLHFQAGGTKFEYGRRGTVRSYR LLEIS
Sequences:
>Translated_885_residues MRGIGGWALNDVTGSAAEQNQESRKGLYGAPWGKSRDGESHHLAHHCADVAACFEAMAALPGVRSRLERAAGGPLSEVDI ARLAVLVFLHDIGKLHPGFQAKAWPEGLWTGPRHGHMREGVEIFQHQAPPDIVRSLHLEKLIEWGVDWNLLFSVLAHHGR PVSMEGGRPPCWRAVAKAGYDPGAASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAE LDVDYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQLVGAFPLAEPLVILEAETGSGKTEAALWR FVLLFAAGKVDSLYFALPTRAAAIQLHARVNKAMARVFGADAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESR LLARWAAESAKRHLAATIAVGTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHLGHGGQAML MSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKGEVAPRGGIGKGGEKSVAIGLVPSWTAETAAALAIDAARSGARV LVVRNTVRAAISTFDRVRQAGGEDLLLTVAKGPALHHGRFAPEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSL DIDADFLITDLCPVDVLLQRIGRLHRHALSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLGGWDERGVLNGIYRDLSVL ELTRRLIAAYPEWRIPAMNRFLVESATHPERIEALHRELGRPWETYWANVCGKDIADAGAARNIALPIGTPFADMRYPDP DKEERIRTRLGAEGARILFSGPVCGPFGVEISGVTLPPPWSHGIDGGTVVAPIALDGVLHFQAGGTKFEYGRRGTVRSYR LLEIS >Mature_885_residues MRGIGGWALNDVTGSAAEQNQESRKGLYGAPWGKSRDGESHHLAHHCADVAACFEAMAALPGVRSRLERAAGGPLSEVDI ARLAVLVFLHDIGKLHPGFQAKAWPEGLWTGPRHGHMREGVEIFQHQAPPDIVRSLHLEKLIEWGVDWNLLFSVLAHHGR PVSMEGGRPPCWRAVAKAGYDPGAASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAE LDVDYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQLVGAFPLAEPLVILEAETGSGKTEAALWR FVLLFAAGKVDSLYFALPTRAAAIQLHARVNKAMARVFGADAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESR LLARWAAESAKRHLAATIAVGTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHLGHGGQAML MSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKGEVAPRGGIGKGGEKSVAIGLVPSWTAETAAALAIDAARSGARV LVVRNTVRAAISTFDRVRQAGGEDLLLTVAKGPALHHGRFAPEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSL DIDADFLITDLCPVDVLLQRIGRLHRHALSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLGGWDERGVLNGIYRDLSVL ELTRRLIAAYPEWRIPAMNRFLVESATHPERIEALHRELGRPWETYWANVCGKDIADAGAARNIALPIGTPFADMRYPDP DKEERIRTRLGAEGARILFSGPVCGPFGVEISGVTLPPPWSHGIDGGTVVAPIALDGVLHFQAGGTKFEYGRRGTVRSYR LLEIS
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=812, Percent_Identity=28.0788177339901, Blast_Score=215, Evalue=1e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 95209; Mature: 95209
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGIGGWALNDVTGSAAEQNQESRKGLYGAPWGKSRDGESHHLAHHCADVAACFEAMAAL CCCCCCCEECCCCCCHHHHCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC PGVRSRLERAAGGPLSEVDIARLAVLVFLHDIGKLHPGFQAKAWPEGLWTGPRHGHMREG HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH VEIFQHQAPPDIVRSLHLEKLIEWGVDWNLLFSVLAHHGRPVSMEGGRPPCWRAVAKAGY HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC DPGAASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAE CCCCCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC LDVDYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQLVGAFPLAE CCHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHCCCCCC PLVILEAETGSGKTEAALWRFVLLFAAGKVDSLYFALPTRAAAIQLHARVNKAMARVFGA CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC DAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESRLLARWAAESAKRHLAATIAV CCCHHEEECCCHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEC GTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHLGHGGQAML CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCEEE MSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKGEVAPRGGIGKGGEKSVAIGLVPS HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC WTAETAAALAIDAARSGARVLVVRNTVRAAISTFDRVRQAGGEDLLLTVAKGPALHHGRF CCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC APEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSLDIDADFLITDLCPVDVLLQR CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHCCCHHHHHHH IGRLHRHALSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLGGWDERGVLNGIYRDLSVL HHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHH ELTRRLIAAYPEWRIPAMNRFLVESATHPERIEALHRELGRPWETYWANVCGKDIADAGA HHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCC ARNIALPIGTPFADMRYPDPDKEERIRTRLGAEGARILFSGPVCGPFGVEISGVTLPPPW CCEEEEECCCCHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECEECCCCC SHGIDGGTVVAPIALDGVLHFQAGGTKFEYGRRGTVRSYRLLEIS CCCCCCCCEEEEEEECCEEEEECCCCEECCCCCCCCCEEEEEEEC >Mature Secondary Structure MRGIGGWALNDVTGSAAEQNQESRKGLYGAPWGKSRDGESHHLAHHCADVAACFEAMAAL CCCCCCCEECCCCCCHHHHCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC PGVRSRLERAAGGPLSEVDIARLAVLVFLHDIGKLHPGFQAKAWPEGLWTGPRHGHMREG HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH VEIFQHQAPPDIVRSLHLEKLIEWGVDWNLLFSVLAHHGRPVSMEGGRPPCWRAVAKAGY HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC DPGAASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAE CCCCCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC LDVDYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQLVGAFPLAE CCHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHCCCCCC PLVILEAETGSGKTEAALWRFVLLFAAGKVDSLYFALPTRAAAIQLHARVNKAMARVFGA CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC DAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESRLLARWAAESAKRHLAATIAV CCCHHEEECCCHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEC GTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHLGHGGQAML CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCEEE MSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKGEVAPRGGIGKGGEKSVAIGLVPS HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC WTAETAAALAIDAARSGARVLVVRNTVRAAISTFDRVRQAGGEDLLLTVAKGPALHHGRF CCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC APEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSLDIDADFLITDLCPVDVLLQR CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHCCCHHHHHHH IGRLHRHALSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLGGWDERGVLNGIYRDLSVL HHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHH ELTRRLIAAYPEWRIPAMNRFLVESATHPERIEALHRELGRPWETYWANVCGKDIADAGA HHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCC ARNIALPIGTPFADMRYPDPDKEERIRTRLGAEGARILFSGPVCGPFGVEISGVTLPPPW CCEEEEECCCCHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECEECCCCC SHGIDGGTVVAPIALDGVLHFQAGGTKFEYGRRGTVRSYRLLEIS CCCCCCCCEEEEEEECCEEEEECCCCEECCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]