| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is fabG [H]
Identifier: 83591679
GI number: 83591679
Start: 409696
End: 410487
Strand: Direct
Name: fabG [H]
Synonym: Rru_A0339
Alternate gene names: 83591679
Gene position: 409696-410487 (Clockwise)
Preceding gene: 83591678
Following gene: 83591680
Centisome position: 9.41
GC content: 69.57
Gene sequence:
>792_bases ATGAGCTTCGATCTCGGTTTGAGCGGCGCCCGCGCCCTGGTGACGGGTGGAACGAAGGGGATCGGTGCGGCCGTGGTCGG TGCGCTGCGCGATGCGGGCGTGCGCGTGGTCACCACCGCGCGCCGTGTGCCGGCCAACCCGGCGGACCCGGCGAACCCTG TCCACTGCCTCGCCGCCGACATGACCACCGCCGAGGGCTGTGACGCGGTAGCGAAATACGCGATCGATCGTCTCGGCGGC GTGGACATTATCGTGCATGTGGTCGGCGGTTCGTCGGCCCCCGCCGGCGGGTTCGCCGCCCTGGACGATGCCGAATGGTC GAGGGCCCTGAACTGGAACCTGATGCCGGCCGTCCGTCTTGACCGTGCGCTTCTGCCGGGAATGATCGCGCGGGGCGCGG GGGTGATCGTGCATATCACCTCGATCCAGACCCGTCTGCCGCTTCCAGAATCGACGACGGCCTATGCCGCCGCCAAGGCG GCGCTTGCCTCCTACAGCAAGAGCCTGTCGAAGGAGGTCGCCGCGAAGGGCATCCGTGTGGTGCGGGTTTCTCCGGGCTG GGTAGAGACCGAGGCGGCGGTTGCCATGGCTGAGCGGCTGGCCGAACAGGCCGGCACCGACTACGCGGGCGGCAAGCAGA TCATCATGAAGGCGCTCGGCGGCATCCCGCTCGGCCGACCGGCCAAGCCGACCGAGGTCGCCGATCTGGTCGCCTTCGTC GTCTCCCCGCGCGCCGGCGCGGTGACGGGCACGGAGTTCGTCATCGATGGCGGAACGGTGCCGACCGTTTGA
Upstream 100 bases:
>100_bases TAAGCGGCCGTGTCGCGGGGGATTTCCCCGGTAGCCCGGTCGATCTGCGCTATGCGTTCGTTGTGGACGGCGACAAGATC GCCCGCTTGGAGATCACGGG
Downstream 100 bases:
>100_bases CGGACCTTTGTTTAGGCCCATCGCAAAAAGGGTCCCCCGCCGAGCGCCGCGCCCCCGGCACATCCCGAGCACTCTCAGCC AGAGTGCGGCGATGATGTGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSFDLGLSGARALVTGGTKGIGAAVVGALRDAGVRVVTTARRVPANPADPANPVHCLAADMTTAEGCDAVAKYAIDRLGG VDIIVHVVGGSSAPAGGFAALDDAEWSRALNWNLMPAVRLDRALLPGMIARGAGVIVHITSIQTRLPLPESTTAYAAAKA ALASYSKSLSKEVAAKGIRVVRVSPGWVETEAAVAMAERLAEQAGTDYAGGKQIIMKALGGIPLGRPAKPTEVADLVAFV VSPRAGAVTGTEFVIDGGTVPTV
Sequences:
>Translated_263_residues MSFDLGLSGARALVTGGTKGIGAAVVGALRDAGVRVVTTARRVPANPADPANPVHCLAADMTTAEGCDAVAKYAIDRLGG VDIIVHVVGGSSAPAGGFAALDDAEWSRALNWNLMPAVRLDRALLPGMIARGAGVIVHITSIQTRLPLPESTTAYAAAKA ALASYSKSLSKEVAAKGIRVVRVSPGWVETEAAVAMAERLAEQAGTDYAGGKQIIMKALGGIPLGRPAKPTEVADLVAFV VSPRAGAVTGTEFVIDGGTVPTV >Mature_262_residues SFDLGLSGARALVTGGTKGIGAAVVGALRDAGVRVVTTARRVPANPADPANPVHCLAADMTTAEGCDAVAKYAIDRLGGV DIIVHVVGGSSAPAGGFAALDDAEWSRALNWNLMPAVRLDRALLPGMIARGAGVIVHITSIQTRLPLPESTTAYAAAKAA LASYSKSLSKEVAAKGIRVVRVSPGWVETEAAVAMAERLAEQAGTDYAGGKQIIMKALGGIPLGRPAKPTEVADLVAFVV SPRAGAVTGTEFVIDGGTVPTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=29.2134831460674, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI40254992, Length=254, Percent_Identity=30.3149606299213, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=28.957528957529, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI32483357, Length=263, Percent_Identity=27.7566539923954, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI66933014, Length=200, Percent_Identity=26, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=30, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI4503817, Length=237, Percent_Identity=26.1603375527426, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI38348362, Length=189, Percent_Identity=32.8042328042328, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI38424085, Length=192, Percent_Identity=32.2916666666667, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=26.3358778625954, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=30.6201550387597, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1787335, Length=259, Percent_Identity=30.5019305019305, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787905, Length=275, Percent_Identity=29.4545454545455, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786812, Length=268, Percent_Identity=28.3582089552239, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=27.8625954198473, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI87082160, Length=265, Percent_Identity=26.4150943396226, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790717, Length=265, Percent_Identity=24.5283018867925, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=28.7937743190661, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789208, Length=264, Percent_Identity=23.8636363636364, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI2367175, Length=125, Percent_Identity=33.6, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=29.6442687747036, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=27.3408239700375, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562910, Length=274, Percent_Identity=29.1970802919708, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI72000259, Length=274, Percent_Identity=27.007299270073, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=27.7153558052434, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=27.1698113207547, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=26.7924528301887, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=26.953125, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=26.6666666666667, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=27.2030651340996, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=27.7566539923954, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=25.8426966292135, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=26.3940520446097, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=26.6917293233083, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=25.2918287937743, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=25.8181818181818, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=26.3940520446097, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=26.2172284644195, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=26.6409266409266, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17561402, Length=263, Percent_Identity=24.7148288973384, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508651, Length=256, Percent_Identity=26.5625, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=24.1758241758242, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=24.7191011235955, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=24.5136186770428, Blast_Score=67, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=255, Percent_Identity=26.2745098039216, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=239, Percent_Identity=25.5230125523013, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=31.1284046692607, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=31.6831683168317, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=29.7297297297297, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=27.4131274131274, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=25.6704980842912, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=29.296875, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24639444, Length=258, Percent_Identity=25.1937984496124, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26643; Mature: 26512
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFDLGLSGARALVTGGTKGIGAAVVGALRDAGVRVVTTARRVPANPADPANPVHCLAAD CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCCEEEECC MTTAEGCDAVAKYAIDRLGGVDIIVHVVGGSSAPAGGFAALDDAEWSRALNWNLMPAVRL CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHCCCCCCHHHHH DRALLPGMIARGAGVIVHITSIQTRLPLPESTTAYAAAKAALASYSKSLSKEVAAKGIRV HHHHHHHHHHCCCCEEEEEEEHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE VRVSPGWVETEAAVAMAERLAEQAGTDYAGGKQIIMKALGGIPLGRPAKPTEVADLVAFV EEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH VSPRAGAVTGTEFVIDGGTVPTV HCCCCCCCCCCEEEECCCCCCCC >Mature Secondary Structure SFDLGLSGARALVTGGTKGIGAAVVGALRDAGVRVVTTARRVPANPADPANPVHCLAAD CCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCCEEEECC MTTAEGCDAVAKYAIDRLGGVDIIVHVVGGSSAPAGGFAALDDAEWSRALNWNLMPAVRL CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHCCCCCCHHHHH DRALLPGMIARGAGVIVHITSIQTRLPLPESTTAYAAAKAALASYSKSLSKEVAAKGIRV HHHHHHHHHHCCCCEEEEEEEHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE VRVSPGWVETEAAVAMAERLAEQAGTDYAGGKQIIMKALGGIPLGRPAKPTEVADLVAFV EEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH VSPRAGAVTGTEFVIDGGTVPTV HCCCCCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]