| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
Click here to switch to the map view.
The map label for this gene is yggT [C]
Identifier: 83313475
GI number: 83313475
Start: 4779843
End: 4780169
Strand: Reverse
Name: yggT [C]
Synonym: amb4376
Alternate gene names: 83313475
Gene position: 4780169-4779843 (Counterclockwise)
Preceding gene: 83313477
Following gene: 83313474
Centisome position: 96.24
GC content: 59.33
Gene sequence:
>327_bases ATGCCCTCACAGGTGCCGCCGATGGACTTCATTCTGGAACCGCTGATCAGGGTGATCCTCATCGCCCTCGATCTGTACAT GTACATCGTGATCGCATCGGTGATCGCCAGTTGGCTGGTCGCCTTCGGGGTGATCAACACCTACAATTCCACGGTGCGGA CCATTCTGGACGTCATCTATCGCCTGACCGAGCCGGCCCTGCGGCCGATCCGCCGGATGATGCCCGACCTCGGGTCGGTG GATCTTTCACCCATCGTGCTCTGGCTGATCATCCTGTTCGTGGAGATGCTGCTGGGCAAGGCGCTCAGGCTCGTCATGAT GTCATGA
Upstream 100 bases:
>100_bases TCGTCCATTACCATCCCTCCCTGGATTAGGTGCCTTCAAAGATGGCATCGGCAGCCTTGCGCGGCAAGGCCGCCGAGGAT AGGTTTGGGCGCGATTCGAA
Downstream 100 bases:
>100_bases GCGCTTCGCCCTTCGCCCCCTGTGCCGGCGGGCTGAAGGTGGCTGTCCGGCTCACCCCCAAGGCGTCCCGCGACCGGATC AACGGCCCGGCGGCCGAGGC
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MPSQVPPMDFILEPLIRVILIALDLYMYIVIASVIASWLVAFGVINTYNSTVRTILDVIYRLTEPALRPIRRMMPDLGSV DLSPIVLWLIILFVEMLLGKALRLVMMS
Sequences:
>Translated_108_residues MPSQVPPMDFILEPLIRVILIALDLYMYIVIASVIASWLVAFGVINTYNSTVRTILDVIYRLTEPALRPIRRMMPDLGSV DLSPIVLWLIILFVEMLLGKALRLVMMS >Mature_107_residues PSQVPPMDFILEPLIRVILIALDLYMYIVIASVIASWLVAFGVINTYNSTVRTILDVIYRLTEPALRPIRRMMPDLGSVD LSPIVLWLIILFVEMLLGKALRLVMMS
Specific function: Unknown
COG id: COG0762
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yggT family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003425 [H]
Pfam domain/function: PF02325 YGGT [H]
EC number: NA
Molecular weight: Translated: 12274; Mature: 12143
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 7.4 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.5 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSQVPPMDFILEPLIRVILIALDLYMYIVIASVIASWLVAFGVINTYNSTVRTILDVIY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLTEPALRPIRRMMPDLGSVDLSPIVLWLIILFVEMLLGKALRLVMMS HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PSQVPPMDFILEPLIRVILIALDLYMYIVIASVIASWLVAFGVINTYNSTVRTILDVIY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLTEPALRPIRRMMPDLGSVDLSPIVLWLIILFVEMLLGKALRLVMMS HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194 [H]