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The map label for this gene is xerD [C]

Identifier: 83313391

GI number: 83313391

Start: 4699549

End: 4700073

Strand: Reverse

Name: xerD [C]

Synonym: amb4292

Alternate gene names: 83313391

Gene position: 4700073-4699549 (Counterclockwise)

Preceding gene: 83313395

Following gene: 83313387

Centisome position: 94.62

GC content: 59.24

Gene sequence:

>525_bases
GTGCTGTCCGTTGTTGCCAATCAGCGTCACGCAGCGCGTAACCGCGTTGCGCTCATGCTCAGCTTCTATGCTGGAATGCG
CGTCGGCGAGATCGCCCATTTGAAGCTCGGCGATGTGATTGATGGCGATGGCCGCGTGAAGGACCAAATTGTGCTGCCTG
CCAGCTACACCAAAACCGCCGAGGCCAGGACGGTGTTCGTCAGCGGCAAGCTGCGCCGCGAACTTGAGCGCTTCCTGTCG
TGTAACACGACAACAGATCGCGCCGCGCCGTTCCTCGTAACGCAAAAGGCCACGGCGTTCTCGGCCAACACGCTCTGCCA
GCTATTCGGACAGATATATGCTCTGGCAGGCATTGATGGAGCGAGCAGCCACAGCGGTCGGCGGTGGTTCATCACGCAGA
TGGCTCACAAGGGCGTTTCGGCCAAGGTCATCATGACGCTGGCTGGTCATCGCCACCTGTCCACCACGCAGCGCTACATT
GAGGTCAACGACCATATGATGAAGGCTGCGGTGGACGTCATTTAA

Upstream 100 bases:

>100_bases
CGCGCTTTTGATCATATAATGATTTACCCAATGCGATAACTTTTCATTAGGTAAAGCGATGAAACAGGCCAAGGTACTCA
GCGAAGCGGAACTCAAGCGC

Downstream 100 bases:

>100_bases
AGGCGCACGACCCTACATTGTTAGTCGATTTCGTCCATTTTCTTTGGATTGGTAAAGCATGGCATCCGCAGCCTCAATCA
GCATTTTTGAAGTCGTTCCA

Product: integrase

Products: NA

Alternate protein names: Integrase Family Protein; Integrase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTAEARTVFVSGKLRRELERFLS
CNTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDGASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI
EVNDHMMKAAVDVI

Sequences:

>Translated_174_residues
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTAEARTVFVSGKLRRELERFLS
CNTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDGASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI
EVNDHMMKAAVDVI
>Mature_174_residues
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTAEARTVFVSGKLRRELERFLS
CNTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDGASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI
EVNDHMMKAAVDVI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19135; Mature: 19135

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTA
CCEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCEEEEEEECCCCCCCC
EARTVFVSGKLRRELERFLSCNTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDG
CCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
ASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYIEVNDHMMKAAVDVI
CCCCCCCEEEEEHHHHCCCCEEEEEEECCCCCCHHHHHEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTA
CCEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCEEEEEEECCCCCCCC
EARTVFVSGKLRRELERFLSCNTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDG
CCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
ASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYIEVNDHMMKAAVDVI
CCCCCCCEEEEEHHHHCCCCEEEEEEECCCCCCHHHHHEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA