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The map label for this gene is rbfA

Identifier: 83313169

GI number: 83313169

Start: 4470753

End: 4471181

Strand: Reverse

Name: rbfA

Synonym: amb4070

Alternate gene names: 83313169

Gene position: 4471181-4470753 (Counterclockwise)

Preceding gene: 83313170

Following gene: 83313159

Centisome position: 90.02

GC content: 69.23

Gene sequence:

>429_bases
ATGAGCCGGGGTGCCAAGCCACCGTCCCAGCGCCAGCTTCGCGTCGGCGAGGAACTGCGCCATGCTATCGCCATGGTGAT
CGAGCGCGGAGAGTTCCGCGATCCCGACCTGCTGGGCCGCGCCATCACCGTGACCGAGGTCCGGGTCAGCCCCGACCTGC
GCAACGCCACCGTCTTCGTCGTTCCCCTGGGCGGCGGCGACGTGGCGCCGATCCTGGCGGGCCTCAAGCGCGCCAAGGCC
TTCCTGCGCCACGAAATCTCGCGCATGGTCGAACTGCGCGCCGTGCCCGATCTGTGGTTCCAGGAAGACACCACCTTCGA
CACCGCGTCCCGGATCGATTCCATCCTCAACTCGCCGGAAGTCCGCCGCGACATCGACCACGCCCCGGCCGAGGACGAGT
TCCCCACCGACGGCGACGACGGGCAGTAG

Upstream 100 bases:

>100_bases
AGACATCCGGGTCGGCGACGTCATCGAGTGCTTCGAGATCGAGGAGATCGCGGTCACCCTGTAACGGGGTGATCGTGTTC
CTCGCGGCGGAGTCATTGCC

Downstream 100 bases:

>100_bases
GCCGAGATCGCTTCGCGAGCGGGCGGCCGCCCGCGCCCGCGTGGAAGCACAGCTTCCGCACCATCAGTTTTCTCACGAGG
ACCAGGGATGCGTGAAGGGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFVVPLGGGDVAPILAGLKRAKA
FLRHEISRMVELRAVPDLWFQEDTTFDTASRIDSILNSPEVRRDIDHAPAEDEFPTDGDDGQ

Sequences:

>Translated_142_residues
MSRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFVVPLGGGDVAPILAGLKRAKA
FLRHEISRMVELRAVPDLWFQEDTTFDTASRIDSILNSPEVRRDIDHAPAEDEFPTDGDDGQ
>Mature_141_residues
SRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFVVPLGGGDVAPILAGLKRAKAF
LRHEISRMVELRAVPDLWFQEDTTFDTASRIDSILNSPEVRRDIDHAPAEDEFPTDGDDGQ

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_MAGSA (Q2VZV1)

Other databases:

- EMBL:   AP007255
- RefSeq:   YP_423433.1
- ProteinModelPortal:   Q2VZV1
- SMR:   Q2VZV1
- STRING:   Q2VZV1
- GeneID:   3802819
- GenomeReviews:   AP007255_GR
- KEGG:   mag:amb4070
- NMPDR:   fig|342108.5.peg.3650
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- PhylomeDB:   Q2VZV1
- ProtClustDB:   PRK00521
- BioCyc:   MMAG342108:AMB4070-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15784; Mature: 15653

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEEEEECCCCCCCEEEE
VPLGGGDVAPILAGLKRAKAFLRHEISRMVELRAVPDLWFQEDTTFDTASRIDSILNSPE
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH
VRRDIDHAPAEDEFPTDGDDGQ
HHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEEEEECCCCCCCEEEE
VPLGGGDVAPILAGLKRAKAFLRHEISRMVELRAVPDLWFQEDTTFDTASRIDSILNSPE
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH
VRRDIDHAPAEDEFPTDGDDGQ
HHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA