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The map label for this gene is ihfB [H]

Identifier: 83313103

GI number: 83313103

Start: 4412606

End: 4412905

Strand: Reverse

Name: ihfB [H]

Synonym: amb4004

Alternate gene names: 83313103

Gene position: 4412905-4412606 (Counterclockwise)

Preceding gene: 83313104

Following gene: 83313102

Centisome position: 88.84

GC content: 65.67

Gene sequence:

>300_bases
GTGAAATCCATGACCAAGTCGGAGCTGATCGCCCGCCTGGCCGAGGCCAATCCCCATCTCTATCAGCGGGATGTGGAGCG
CATCGTCACCACCATCTTCGACGAGATCGCCTCGGCGCTGGCCCGGGGCGACCGGGTCGAGCTGCGGGGCTTCGGCGCCT
TTTCGGTGAAGAAGCGCGATCCGCGCGTCGGTCGCAATCCCCGCACCGGCGAAACGGTGTCGGTGGACGGCAAGGCGGTT
CCCTTCTTCAAGACCGGCAAGCAGCTGCGCGAGAAGCTTAACGTCGGCGGCGGATCGTGA

Upstream 100 bases:

>100_bases
AAAAATCGTTCTCACTCAGAGACTTGTCCCCCAGAGTCGAGCTTGACGGGGGCGGGGGGCTTCGGCATGCTGGCCCCCAA
GCTGGAACACAAGCAAGGAC

Downstream 100 bases:

>100_bases
GGCTGTTCGCCTGGATCATCGGCCTTCCCTTGGCCGTTCTGGTGACGGTGTTCGCCGTCGCCAACCGGGCGGAGATTCGT
TTCGACCTGTGGCCCCTGCC

Product: nucleoid DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MKSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDPRVGRNPRTGETVSVDGKAV
PFFKTGKQLREKLNVGGGS

Sequences:

>Translated_99_residues
MKSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDPRVGRNPRTGETVSVDGKAV
PFFKTGKQLREKLNVGGGS
>Mature_99_residues
MKSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDPRVGRNPRTGETVSVDGKAV
PFFKTGKQLREKLNVGGGS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=94, Percent_Identity=52.1276595744681, Blast_Score=106, Evalue=2e-25,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=35.1648351648352, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=36.3636363636364, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10932; Mature: 10932

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: PS00045 HISTONE_LIKE ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRD
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
PRVGRNPRTGETVSVDGKAVPFFKTGKQLREKLNVGGGS
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRD
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
PRVGRNPRTGETVSVDGKAVPFFKTGKQLREKLNVGGGS
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA