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The map label for this gene is xerD [C]

Identifier: 83312867

GI number: 83312867

Start: 4145931

End: 4146455

Strand: Reverse

Name: xerD [C]

Synonym: amb3768

Alternate gene names: 83312867

Gene position: 4146455-4145931 (Counterclockwise)

Preceding gene: 83312868

Following gene: 83312864

Centisome position: 83.48

GC content: 58.67

Gene sequence:

>525_bases
GTGCTGTCCGTTGTCGCCAATCAGCGTCATGCAGCGCGTAACCGCGTTGCGCTCATGCTCAGTTTTTATGCGGGGATGCG
CGTCGGCGAGATTGCCCATTTGAAACTTGGCGATGTGATTGACGGCGATGGTCGCGTGAAGGACCAAATCGTGCTGCCTG
CCAGCTACACCAAAACAGCGGAGGCCAGGACGGTGTTCGTTAGTGGTAAGCTGCGCCGCGAACTGGAACGCTTCGTGTCG
TGCAGCACGACAACGGATCGCGCCGCGCCGTTCCTCGTGACACAAAAGGCCACGGCGTTCTCGGCCAACACGCTCTGCCA
ACTATTCGGACAGATATATGCGCTGGCTGGGATTGATGGCGCGAGCAGCCACAGCGGTCGGCGGTGGTTCATCACGCAGA
TGGCTCACAAGGGCGTTTCGGCCAAGGTGATCATGACGCTGGCTGGTCATCGCCACTTGTCCACCACGCAGCGCTACATC
GAGGTCAACGACCAGATGATGCGATCCGCCGTTGAAAATTTATAG

Upstream 100 bases:

>100_bases
TGCGATTTTGATCATATAATTTTTTACCTAGTGGGATAACTTTTCATTAGGTAAAGCGATGAAGCAAGCAAAGGTACTCA
GCGAAGCGGAACTGAAGCGC

Downstream 100 bases:

>100_bases
CTGCCTTAAAGCGGGGCGAACATACAGCATGTATATTAGCCTCTCAGGCCAGCTTGATCTTTGCTAGGTCGCTTTCGGGC
GTTTCGCTCTTTAAGGCCGC

Product: integrase

Products: NA

Alternate protein names: Integrase Family Protein; Integrase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTAEARTVFVSGKLRRELERFVS
CSTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDGASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI
EVNDQMMRSAVENL

Sequences:

>Translated_174_residues
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTAEARTVFVSGKLRRELERFVS
CSTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDGASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI
EVNDQMMRSAVENL
>Mature_174_residues
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTAEARTVFVSGKLRRELERFVS
CSTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDGASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI
EVNDQMMRSAVENL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19158; Mature: 19158

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTA
CCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCCEEEECCCCCCCC
EARTVFVSGKLRRELERFVSCSTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDG
CCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
ASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYIEVNDQMMRSAVENL
CCCCCCCEEEEEHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVVANQRHAARNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQIVLPASYTKTA
CCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCCEEEECCCCCCCC
EARTVFVSGKLRRELERFVSCSTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGIDG
CCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
ASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYIEVNDQMMRSAVENL
CCCCCCCEEEEEHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA