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The map label for this gene is xerD [C]

Identifier: 83312787

GI number: 83312787

Start: 4053353

End: 4053922

Strand: Reverse

Name: xerD [C]

Synonym: amb3688

Alternate gene names: 83312787

Gene position: 4053922-4053353 (Counterclockwise)

Preceding gene: 83312802

Following gene: 83312786

Centisome position: 81.61

GC content: 57.37

Gene sequence:

>570_bases
ATGTCGCAAGCCAAAGTCCTGTCCGAAGCCGAGATGAAGCGCGTCCTGGCTGTGGTCGCCCAGCACGGCATCCTTTCCAC
CCGTAATCGCCTTGCTGTTTTGCTGTCCCATTGGGCGGGCATGCGGGCTGGTGAAATCGCCGCCTTGAAAATTATGGACG
TAGTTAATGAAGGCGGCGCTGTCCGTGATCGCGTCCATCTCGCAGCCACCCAAACCAAGGGGAAGCGCGGACGCACGGTG
TTCATCAACACCAAGCTCCAGCGCGAGATCGCTCGCTATCTTGAACAGCGGGAATGGACGGACGAACGCAAGCCGCTGAT
CCGCAGCCAAAAGGGCGGACACTTCTCGCCGACCACAATGGTCATGCTGTTCCGCCGCATTTACGACGAAGCGGGTTTGT
CGGATGCGCGTTCTCACAGTGGTCGTCGTTCGTATTTAACGACGCTGGCGAACAAGGGTGTTTCCGTGTTTGTGCTGCAA
CAGCTTGCCGGACACCAAAGCATCCAAACCACCCAGCGTTACGTCACAGTCAATGAAGAGATGATGGTGAAGGCGGCTGA
GTTGGCTTAG

Upstream 100 bases:

>100_bases
CGATTTCTGCGGTTTCCAAAGCCCGATATCGGGGAGACCTTGGCAAAAGGTGATGTGACACTACCCATAGGATGAAAACA
TAACATTATGGGTGTTCGTC

Downstream 100 bases:

>100_bases
CCCCGCAACGCTTCCAGAAGAATTTTTAGGTCTGGGGCCAAAACAACACCCGATTGACTGCGGGGAATTATTTTTTTGCC
TGTGATTCGTTCCGATTCAT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSQAKVLSEAEMKRVLAVVAQHGILSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGAVRDRVHLAATQTKGKRGRTV
FINTKLQREIARYLEQREWTDERKPLIRSQKGGHFSPTTMVMLFRRIYDEAGLSDARSHSGRRSYLTTLANKGVSVFVLQ
QLAGHQSIQTTQRYVTVNEEMMVKAAELA

Sequences:

>Translated_189_residues
MSQAKVLSEAEMKRVLAVVAQHGILSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGAVRDRVHLAATQTKGKRGRTV
FINTKLQREIARYLEQREWTDERKPLIRSQKGGHFSPTTMVMLFRRIYDEAGLSDARSHSGRRSYLTTLANKGVSVFVLQ
QLAGHQSIQTTQRYVTVNEEMMVKAAELA
>Mature_188_residues
SQAKVLSEAEMKRVLAVVAQHGILSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGAVRDRVHLAATQTKGKRGRTVF
INTKLQREIARYLEQREWTDERKPLIRSQKGGHFSPTTMVMLFRRIYDEAGLSDARSHSGRRSYLTTLANKGVSVFVLQQ
LAGHQSIQTTQRYVTVNEEMMVKAAELA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21203; Mature: 21072

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQAKVLSEAEMKRVLAVVAQHGILSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGA
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
VRDRVHLAATQTKGKRGRTVFINTKLQREIARYLEQREWTDERKPLIRSQKGGHFSPTTM
HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH
VMLFRRIYDEAGLSDARSHSGRRSYLTTLANKGVSVFVLQQLAGHQSIQTTQRYVTVNEE
HHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHEEECHH
MMVKAAELA
HHHHHHHCC
>Mature Secondary Structure 
SQAKVLSEAEMKRVLAVVAQHGILSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGA
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
VRDRVHLAATQTKGKRGRTVFINTKLQREIARYLEQREWTDERKPLIRSQKGGHFSPTTM
HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH
VMLFRRIYDEAGLSDARSHSGRRSYLTTLANKGVSVFVLQQLAGHQSIQTTQRYVTVNEE
HHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHEEECHH
MMVKAAELA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA