| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is icfG [H]
Identifier: 83312619
GI number: 83312619
Start: 3867991
End: 3870690
Strand: Reverse
Name: icfG [H]
Synonym: amb3520
Alternate gene names: 83312619
Gene position: 3870690-3867991 (Counterclockwise)
Preceding gene: 83312620
Following gene: 83312618
Centisome position: 77.93
GC content: 65.81
Gene sequence:
>2700_bases ATGCTGCTCCGCACCCGCGTAACCCTCATCGTCACCGCGACCTATTCCCTGCTGGTGGCGGGGCTGTTCTTCGCGGGGGT GAAGAACGAGGATCTGGCCGACGAGCGCTATGTCCAGGCCACCTTGAACGGCCAGCAGATCTTCTGGGACAAGCTGGTGG AGAACACCGTCCAGCGCCTGGAGGGGGCCACGCCGCTGCTGTTGGCCAATCAGGAGATGATTTCCGCCATCGCCCGCAAG AGCCCCAGCGAGGCGCGCGAGGCTATGACGCCGACCATCGCCGGCCTGACCCGGCGCGGCGTGGGCCGGGTGGAGATCGT CGGCCTGGACGGCGACCTGCTGTATTCGTCCCAGGGATCGCTGCTGGAGACTCCGCTGGTGGATGCCGGCACCGTGCGTC TGATCGCCGAGACGGGCAAGGCGCGCACCGGCGTCACCCAGAACAGCGACAAGCAGTTCATCGCCGCCATCACCGTGCCT CTGGCGGCGCTGGACAAGGCGGTGATCGGCGTGGCCACCATCGTCTCCGACCTGCGTCCGCCGCTGGAGGAGTTCAAGGC GTCCACCGGCTCGGACGTCTTCCTGGTGGATCGCGCCGGCCATATGACCGACGGCACCAACGACCTGCTGTGGCGGGTCT TCGAGTCCAAGATCTCGGTACGCAAGAGCCGGCTGGAGACCTGGCGCGACGGCTCGCGCTTCTATTCCGTGGTGGTGTTT CCGCTGTCCGACGGCGAGGGCAGGGTGATCGGCGCCCTGGTCAGCGTGCGCGATTCCACCGACACCCAGGCCCGCCAGCA CGAAATCCGCATGATCGCCATCGGTGCGGTGGGGGTGTTCCTGCTGCTGGTGCTGGTGGTGTTCTCGGTCTATCTGCGCC GCTCGTTCGACCCTCTCGACCAGGCCATCGCCGTGCTGAACGCCCTGTCGCGGGGCGACACCTCGGTGATGCTGGACGTG CGGCACGAAAACGACGAGATCGGCCGCATCGCCAGCACCGTGGGCGTGTTCCGCGAGAACGCCATCAAGATCGACATGCT GGAGGAGCGGCGCGAGCGCCAGCGCCGCCGCCAGGAACTGTTCATCCGGCTGCAGATGCTGCGCCTGTCCGAGATGCTGG AGCAGGACGCCCGCGAGGCGGTGCTGGGTGATCTGAAGCAGATCGAGGAATTGTCCAACCGCTCGACCTCGGGCGACCAG GGCGGCGACGGCGCCAAGGGCGAGCTGGAAGTGTTGGCGGTGGCCTTCCAGACCATGTCGTCGCGCATCCGCGAACAGCA CGAGCGTCTGGAATCGCTGATCGCCGAGCGCACCCGTGACGTGGAGATCCTGCGCGAGGCCCTGCGCACCCGCGACCAGC TGGCGGCGCTTCGCCAGGAACTGGACTTCGCCCGCGAGCTGCAGCTGTCCTCGCTGCCCCAGGTCTTCCCGCCCTTCCCC GACCGGGCCGAGTTCCAGATCCATGCCTCCATGGTGCCCGCCAAGGAGGTGGGAGGCGACTTCTACGACTTCTTCTTCAT CGATCACCACAATCTGGGCTTCGTCATCGGCGACGCCTCGGGCAAGGGCGTGCCGGCGGCCATGTTCATCGCCATCACCC GCTCGCTGGTCAAGGCGGTGGCGCCGCTGTCCAGTTCCCCCGGCGAATGCCTGGCCTTCGTCAATACCATGCTGGCCCGC GACAACCCCCAGACCCTGTTCGCCACCTGCTTCTACGGCGTGCTCGACACCCGCACCGGCGAGGTGGGCTTTTGCAATGC CGGCCATCCGCCGCCCATGATCCTGCGCGGCGATGGCCGGGTGGACGCCATCCGCGACGTGTCGGGCGTGGCGTTGGGCG TCATGGAGGATCTGGACTACGAGACCGGCCACTTCCAGCTGGCGCCGGGCGAGGTGGTCCATCTCTATACCGACGGCGTG ACCGAGGCCCAGGATTCCGTCGACGCCCTCTATGACGAGCCGCGGCTGATCGCCGAACTGGGCCGCACTGCCGACACCGC CCCCGAGGCGGTGATCGCCGCCGTGCTGCGCTCGGTCGAGGCCTTCGTTGGATCCGCGCCACAATTCGACGATATCACCA TGTTGACCTTGCGGTTCGATCTGGCTTCCAATGAGGCGGATGCGCCCATGGAAGACCGGCCGCGGCTGATGCTGACCGGC TTTCCGGCGACGGGAGGCAACGAGATGGACGGCAGGGCCCAGGGGGCGCCCGAGGACGAAATCGCGGCGCCGCCGGTGCG GCAGCCCGCCGCCACGCCGTCCGTCTCCGTCCCCATGGAACCCGACCGGGTCGCCATGGTCATCGCCAATGATGTGGGGG AACTGGAGCGTCTCGCCGAATTGGTCGATGTCTTCGTGGAGAAACACAATCTCCCGGAGAAGCTGGCGTTCAACCTCAAC GTCTGTCTGGACGAATTGATCACCAATATTATCTCATATGGATATGATGACGAGGATAGTCATGAAATCCAGGTGGAGTT CGTCTACGATGGCCGCGAATTCGTGACCACCATCATCGACGATGCCAAGGAGTACAATCCCTTCGTTGAGGCTCCGATCC CCGATCTCGACCTGGACGTGGATGACCGCCCCATCGGCGGGCTGGGGGTGTTTCTGGTGAAGGAATTCATGGATGGAACC GATTACGCGCACGAGGGGGGGCGCAACACCACCACGCTGCGCAAGACGATTTCGGCATAG
Upstream 100 bases:
>100_bases AGCCCAACGAATATCTCGAAATCCTGTCGGGTTTCCTGCCGCCGGACATGGCCATGCCCAGCGCGGTGGCCCGGGCGGTG AACAACGGGCGGGGGGACCC
Downstream 100 bases:
>100_bases GAGAGTTTTTGGTTATGGAAATCCGTGAAGAGCAGGCTGGCGATGCCACCGTGCTGGTCCCCCTGGCCCGGGTGGACAGT TCGACGGCCAAGGCCTTCGA
Product: Serine phosphatase RsbU, regulator of sigma subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MLLRTRVTLIVTATYSLLVAGLFFAGVKNEDLADERYVQATLNGQQIFWDKLVENTVQRLEGATPLLLANQEMISAIARK SPSEAREAMTPTIAGLTRRGVGRVEIVGLDGDLLYSSQGSLLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVP LAALDKAVIGVATIVSDLRPPLEEFKASTGSDVFLVDRAGHMTDGTNDLLWRVFESKISVRKSRLETWRDGSRFYSVVVF PLSDGEGRVIGALVSVRDSTDTQARQHEIRMIAIGAVGVFLLLVLVVFSVYLRRSFDPLDQAIAVLNALSRGDTSVMLDV RHENDEIGRIASTVGVFRENAIKIDMLEERRERQRRRQELFIRLQMLRLSEMLEQDAREAVLGDLKQIEELSNRSTSGDQ GGDGAKGELEVLAVAFQTMSSRIREQHERLESLIAERTRDVEILREALRTRDQLAALRQELDFARELQLSSLPQVFPPFP DRAEFQIHASMVPAKEVGGDFYDFFFIDHHNLGFVIGDASGKGVPAAMFIAITRSLVKAVAPLSSSPGECLAFVNTMLAR DNPQTLFATCFYGVLDTRTGEVGFCNAGHPPPMILRGDGRVDAIRDVSGVALGVMEDLDYETGHFQLAPGEVVHLYTDGV TEAQDSVDALYDEPRLIAELGRTADTAPEAVIAAVLRSVEAFVGSAPQFDDITMLTLRFDLASNEADAPMEDRPRLMLTG FPATGGNEMDGRAQGAPEDEIAAPPVRQPAATPSVSVPMEPDRVAMVIANDVGELERLAELVDVFVEKHNLPEKLAFNLN VCLDELITNIISYGYDDEDSHEIQVEFVYDGREFVTTIIDDAKEYNPFVEAPIPDLDLDVDDRPIGGLGVFLVKEFMDGT DYAHEGGRNTTTLRKTISA
Sequences:
>Translated_899_residues MLLRTRVTLIVTATYSLLVAGLFFAGVKNEDLADERYVQATLNGQQIFWDKLVENTVQRLEGATPLLLANQEMISAIARK SPSEAREAMTPTIAGLTRRGVGRVEIVGLDGDLLYSSQGSLLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVP LAALDKAVIGVATIVSDLRPPLEEFKASTGSDVFLVDRAGHMTDGTNDLLWRVFESKISVRKSRLETWRDGSRFYSVVVF PLSDGEGRVIGALVSVRDSTDTQARQHEIRMIAIGAVGVFLLLVLVVFSVYLRRSFDPLDQAIAVLNALSRGDTSVMLDV RHENDEIGRIASTVGVFRENAIKIDMLEERRERQRRRQELFIRLQMLRLSEMLEQDAREAVLGDLKQIEELSNRSTSGDQ GGDGAKGELEVLAVAFQTMSSRIREQHERLESLIAERTRDVEILREALRTRDQLAALRQELDFARELQLSSLPQVFPPFP DRAEFQIHASMVPAKEVGGDFYDFFFIDHHNLGFVIGDASGKGVPAAMFIAITRSLVKAVAPLSSSPGECLAFVNTMLAR DNPQTLFATCFYGVLDTRTGEVGFCNAGHPPPMILRGDGRVDAIRDVSGVALGVMEDLDYETGHFQLAPGEVVHLYTDGV TEAQDSVDALYDEPRLIAELGRTADTAPEAVIAAVLRSVEAFVGSAPQFDDITMLTLRFDLASNEADAPMEDRPRLMLTG FPATGGNEMDGRAQGAPEDEIAAPPVRQPAATPSVSVPMEPDRVAMVIANDVGELERLAELVDVFVEKHNLPEKLAFNLN VCLDELITNIISYGYDDEDSHEIQVEFVYDGREFVTTIIDDAKEYNPFVEAPIPDLDLDVDDRPIGGLGVFLVKEFMDGT DYAHEGGRNTTTLRKTISA >Mature_899_residues MLLRTRVTLIVTATYSLLVAGLFFAGVKNEDLADERYVQATLNGQQIFWDKLVENTVQRLEGATPLLLANQEMISAIARK SPSEAREAMTPTIAGLTRRGVGRVEIVGLDGDLLYSSQGSLLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVP LAALDKAVIGVATIVSDLRPPLEEFKASTGSDVFLVDRAGHMTDGTNDLLWRVFESKISVRKSRLETWRDGSRFYSVVVF PLSDGEGRVIGALVSVRDSTDTQARQHEIRMIAIGAVGVFLLLVLVVFSVYLRRSFDPLDQAIAVLNALSRGDTSVMLDV RHENDEIGRIASTVGVFRENAIKIDMLEERRERQRRRQELFIRLQMLRLSEMLEQDAREAVLGDLKQIEELSNRSTSGDQ GGDGAKGELEVLAVAFQTMSSRIREQHERLESLIAERTRDVEILREALRTRDQLAALRQELDFARELQLSSLPQVFPPFP DRAEFQIHASMVPAKEVGGDFYDFFFIDHHNLGFVIGDASGKGVPAAMFIAITRSLVKAVAPLSSSPGECLAFVNTMLAR DNPQTLFATCFYGVLDTRTGEVGFCNAGHPPPMILRGDGRVDAIRDVSGVALGVMEDLDYETGHFQLAPGEVVHLYTDGV TEAQDSVDALYDEPRLIAELGRTADTAPEAVIAAVLRSVEAFVGSAPQFDDITMLTLRFDLASNEADAPMEDRPRLMLTG FPATGGNEMDGRAQGAPEDEIAAPPVRQPAATPSVSVPMEPDRVAMVIANDVGELERLAELVDVFVEKHNLPEKLAFNLN VCLDELITNIISYGYDDEDSHEIQVEFVYDGREFVTTIIDDAKEYNPFVEAPIPDLDLDVDDRPIGGLGVFLVKEFMDGT DYAHEGGRNTTTLRKTISA
Specific function: Involved in cross-regulation of inorganic carbon and glucose metabolisms [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003660 - InterPro: IPR001932 - InterPro: IPR010822 [H]
Pfam domain/function: PF00672 HAMP; PF07228 SpoIIE [H]
EC number: NA
Molecular weight: Translated: 98774; Mature: 98774
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS50885 HAMP ; PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLRTRVTLIVTATYSLLVAGLFFAGVKNEDLADERYVQATLNGQQIFWDKLVENTVQRL CCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHH EGATPLLLANQEMISAIARKSPSEAREAMTPTIAGLTRRGVGRVEIVGLDGDLLYSSQGS CCCCCEEEECHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCEEECCCCC LLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVPLAALDKAVIGVATIVSDLRP EECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCC PLEEFKASTGSDVFLVDRAGHMTDGTNDLLWRVFESKISVRKSRLETWRDGSRFYSVVVF CHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE PLSDGEGRVIGALVSVRDSTDTQARQHEIRMIAIGAVGVFLLLVLVVFSVYLRRSFDPLD EECCCCCEEEEEEEEECCCCCHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHH QAIAVLNALSRGDTSVMLDVRHENDEIGRIASTVGVFRENAIKIDMLEERRERQRRRQEL HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH FIRLQMLRLSEMLEQDAREAVLGDLKQIEELSNRSTSGDQGGDGAKGELEVLAVAFQTMS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH SRIREQHERLESLIAERTRDVEILREALRTRDQLAALRQELDFARELQLSSLPQVFPPFP HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DRAEFQIHASMVPAKEVGGDFYDFFFIDHHNLGFVIGDASGKGVPAAMFIAITRSLVKAV CCCCEEEEEECCCHHHHCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH APLSSSPGECLAFVNTMLARDNPQTLFATCFYGVLDTRTGEVGFCNAGHPPPMILRGDGR HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCC VDAIRDVSGVALGVMEDLDYETGHFQLAPGEVVHLYTDGVTEAQDSVDALYDEPRLIAEL CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHH GRTADTAPEAVIAAVLRSVEAFVGSAPQFDDITMLTLRFDLASNEADAPMEDRPRLMLTG CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEE FPATGGNEMDGRAQGAPEDEIAAPPVRQPAATPSVSVPMEPDRVAMVIANDVGELERLAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH LVDVFVEKHNLPEKLAFNLNVCLDELITNIISYGYDDEDSHEIQVEFVYDGREFVTTIID HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHH DAKEYNPFVEAPIPDLDLDVDDRPIGGLGVFLVKEFMDGTDYAHEGGRNTTTLRKTISA HHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHCC >Mature Secondary Structure MLLRTRVTLIVTATYSLLVAGLFFAGVKNEDLADERYVQATLNGQQIFWDKLVENTVQRL CCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHH EGATPLLLANQEMISAIARKSPSEAREAMTPTIAGLTRRGVGRVEIVGLDGDLLYSSQGS CCCCCEEEECHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCEEECCCCC LLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVPLAALDKAVIGVATIVSDLRP EECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCC PLEEFKASTGSDVFLVDRAGHMTDGTNDLLWRVFESKISVRKSRLETWRDGSRFYSVVVF CHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE PLSDGEGRVIGALVSVRDSTDTQARQHEIRMIAIGAVGVFLLLVLVVFSVYLRRSFDPLD EECCCCCEEEEEEEEECCCCCHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHH QAIAVLNALSRGDTSVMLDVRHENDEIGRIASTVGVFRENAIKIDMLEERRERQRRRQEL HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH FIRLQMLRLSEMLEQDAREAVLGDLKQIEELSNRSTSGDQGGDGAKGELEVLAVAFQTMS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH SRIREQHERLESLIAERTRDVEILREALRTRDQLAALRQELDFARELQLSSLPQVFPPFP HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DRAEFQIHASMVPAKEVGGDFYDFFFIDHHNLGFVIGDASGKGVPAAMFIAITRSLVKAV CCCCEEEEEECCCHHHHCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH APLSSSPGECLAFVNTMLARDNPQTLFATCFYGVLDTRTGEVGFCNAGHPPPMILRGDGR HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCC VDAIRDVSGVALGVMEDLDYETGHFQLAPGEVVHLYTDGVTEAQDSVDALYDEPRLIAEL CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHH GRTADTAPEAVIAAVLRSVEAFVGSAPQFDDITMLTLRFDLASNEADAPMEDRPRLMLTG CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEE FPATGGNEMDGRAQGAPEDEIAAPPVRQPAATPSVSVPMEPDRVAMVIANDVGELERLAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH LVDVFVEKHNLPEKLAFNLNVCLDELITNIISYGYDDEDSHEIQVEFVYDGREFVTTIID HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHH DAKEYNPFVEAPIPDLDLDVDDRPIGGLGVFLVKEFMDGTDYAHEGGRNTTTLRKTISA HHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8075401; 8905231 [H]