| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is serB [C]
Identifier: 83312578
GI number: 83312578
Start: 3823587
End: 3824483
Strand: Reverse
Name: serB [C]
Synonym: amb3479
Alternate gene names: 83312578
Gene position: 3824483-3823587 (Counterclockwise)
Preceding gene: 83312582
Following gene: 83312573
Centisome position: 77.0
GC content: 67.22
Gene sequence:
>897_bases ATGATCAACGTTCTGACCCTGATCGCCGGACATGGCGGAGAGGGCCTCGATTCCTCGCTGGTCTTCGAGGTGCGCGGCGC GCTGAGGGCACTGGGCGCCGAAGTGGGCCACGCCCGCTGGCTGAGCCCCGAACACGCCTGCGACCTGGATTTCTCCGAGC TGGACCCGCGTCAGGCCGATCAGGTGGCGGCCCGCATCCTGGAGGGCTGGAACGTGGACGTGGTCGCCCAGAAGGCCGAG GGGCGGCGCAAGATGCTGCTGGTCGCCGACATGGATTCCACCATGGTCATCGGCGAGACCCTGGACGAACTGGCCGACTT CGCCGGGCTGAAGGATCACATCGCGCGCATCACCGCACGCGCCATGAATGGCGAGATCGGCTTCGAGGCGGCTCTGCGCG AGCGCGTCGGCCTGCTCAAGGATCTGCCGGAAGAGTGTCTGCAAAAGACCTGGGACCGCATCGAATTCACCCCGGGCGCC CACAAGCTGGTGCGGACCATGGTCAAGCACGGCGCCCATGCCGTGCTGGTGTCGGGCGGCTTCAAGTTCTTTACCTCCAA GGTCCGCGATGCCTGCGGCTTCCACCGCGACATCGCCAATGAGCTGATTGTCGAGAATGGTCGACTGACCGGTCAGGTCG GCGACACCATCATAGGCCGCGAGGCCAAGCTGGCCACCCTGAACGCCGTGTCGGCGGAGTTGGGCATCACGCCCGAGCTG GCGGTTTCGGTGGGTGACGGCGCCAACGACCTGGACATGCTGCGCGCCGCCGGGCTGGGCGTCGCCTTCCACGCCAAGCC GGTGGTGGCCGCCGAGGCCCGGGTGCGGGTCGACCACGGCGATCTGGTCACCCTGCTCTACGCCCAGGGCTATGCCGACG ACGAGATGGTGGAGTAG
Upstream 100 bases:
>100_bases TATCCCTCGCCAAGGCATCAGCCAAGGGCTTCCTGCTTGCCAAGCCGTGTTGCGGTGCAGTAAACGGGACCGTTTTTCCT CCTCTCCTCAAGGACGCGCC
Downstream 100 bases:
>100_bases TCCGGCAGGCGGTCGGGATCGGCCAGCAGGTAGATTCCGCCGATGCGTCCCCCGATGCAGCCGAAGGTCAGTGCCCAGCG GACGTCGCCCTTCGTCTCGC
Product: phosphoserine phosphatase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MINVLTLIAGHGGEGLDSSLVFEVRGALRALGAEVGHARWLSPEHACDLDFSELDPRQADQVAARILEGWNVDVVAQKAE GRRKMLLVADMDSTMVIGETLDELADFAGLKDHIARITARAMNGEIGFEAALRERVGLLKDLPEECLQKTWDRIEFTPGA HKLVRTMVKHGAHAVLVSGGFKFFTSKVRDACGFHRDIANELIVENGRLTGQVGDTIIGREAKLATLNAVSAELGITPEL AVSVGDGANDLDMLRAAGLGVAFHAKPVVAAEARVRVDHGDLVTLLYAQGYADDEMVE
Sequences:
>Translated_298_residues MINVLTLIAGHGGEGLDSSLVFEVRGALRALGAEVGHARWLSPEHACDLDFSELDPRQADQVAARILEGWNVDVVAQKAE GRRKMLLVADMDSTMVIGETLDELADFAGLKDHIARITARAMNGEIGFEAALRERVGLLKDLPEECLQKTWDRIEFTPGA HKLVRTMVKHGAHAVLVSGGFKFFTSKVRDACGFHRDIANELIVENGRLTGQVGDTIIGREAKLATLNAVSAELGITPEL AVSVGDGANDLDMLRAAGLGVAFHAKPVVAAEARVRVDHGDLVTLLYAQGYADDEMVE >Mature_298_residues MINVLTLIAGHGGEGLDSSLVFEVRGALRALGAEVGHARWLSPEHACDLDFSELDPRQADQVAARILEGWNVDVVAQKAE GRRKMLLVADMDSTMVIGETLDELADFAGLKDHIARITARAMNGEIGFEAALRERVGLLKDLPEECLQKTWDRIEFTPGA HKLVRTMVKHGAHAVLVSGGFKFFTSKVRDACGFHRDIANELIVENGRLTGQVGDTIIGREAKLATLNAVSAELGITPEL AVSVGDGANDLDMLRAAGLGVAFHAKPVVAAEARVRVDHGDLVTLLYAQGYADDEMVE
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1790849, Length=202, Percent_Identity=41.5841584158416, Blast_Score=152, Evalue=2e-38, Organism=Caenorhabditis elegans, GI115534456, Length=186, Percent_Identity=30.6451612903226, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115534454, Length=194, Percent_Identity=29.8969072164948, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6321647, Length=230, Percent_Identity=35.2173913043478, Blast_Score=134, Evalue=2e-32, Organism=Drosophila melanogaster, GI24661601, Length=236, Percent_Identity=25.8474576271186, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 32082; Mature: 32082
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINVLTLIAGHGGEGLDSSLVFEVRGALRALGAEVGHARWLSPEHACDLDFSELDPRQAD CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHCCCCHHH QVAARILEGWNVDVVAQKAEGRRKMLLVADMDSTMVIGETLDELADFAGLKDHIARITAR HHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCEEHHHHHHHHHHHCCHHHHHHHHHHH AMNGEIGFEAALRERVGLLKDLPEECLQKTWDRIEFTPGAHKLVRTMVKHGAHAVLVSGG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCEEEEECC FKFFTSKVRDACGFHRDIANELIVENGRLTGQVGDTIIGREAKLATLNAVSAELGITPEL HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHCCCCCCEEEHHHHHHHCCCCHHE AVSVGDGANDLDMLRAAGLGVAFHAKPVVAAEARVRVDHGDLVTLLYAQGYADDEMVE EEEECCCCCHHHHHHHHCCCEEEECCCEEEECEEEEECCCCEEEEEEECCCCCHHCCC >Mature Secondary Structure MINVLTLIAGHGGEGLDSSLVFEVRGALRALGAEVGHARWLSPEHACDLDFSELDPRQAD CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHCCCCHHH QVAARILEGWNVDVVAQKAEGRRKMLLVADMDSTMVIGETLDELADFAGLKDHIARITAR HHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCEEHHHHHHHHHHHCCHHHHHHHHHHH AMNGEIGFEAALRERVGLLKDLPEECLQKTWDRIEFTPGAHKLVRTMVKHGAHAVLVSGG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCEEEEECC FKFFTSKVRDACGFHRDIANELIVENGRLTGQVGDTIIGREAKLATLNAVSAELGITPEL HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHCCCCCCEEEHHHHHHHCCCCHHE AVSVGDGANDLDMLRAAGLGVAFHAKPVVAAEARVRVDHGDLVTLLYAQGYADDEMVE EEEECCCCCHHHHHHHHCCCEEEECCCEEEECEEEEECCCCEEEEEEECCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]