| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is mrcA [H]
Identifier: 83312335
GI number: 83312335
Start: 3497408
End: 3499966
Strand: Reverse
Name: mrcA [H]
Synonym: amb3236
Alternate gene names: 83312335
Gene position: 3499966-3497408 (Counterclockwise)
Preceding gene: 83312336
Following gene: 83312330
Centisome position: 70.46
GC content: 67.76
Gene sequence:
>2559_bases ATGTACCGCTTTTTTCTGGGACTGTTCAGCCTGTTGATCCTGCTGGCCATCGTGGGGGCGGGCGGGGTGCTGTTCGTCTT CTGGCATTTCGGGCGCGGCCTGCCGGACTATCACCAGCTGGCCCATTACGAGCCGCCGATCACCACCCGCGTCTATGGCG GCGATGGCCGCCTGGTGGCGGAATACGCGGTGGAGAAGCGGGTCTTCGTGCCGCTGCCGGTCATTCCCCAGCTGGTCAAG GATGCCTTCCTCTCGGCCGAGGACAAGAACTTCTACACCCATGCCGGCATCGATCCGGTGGGTATCGCCCGCGCCATCGT GGTCAACCTGAAAAACCGGGGCAAGGGCGCCGACCGGCGGCCGGTGGGCGCGTCGACCATCACCCAGCAGGTGGCCAAGA ATTTCCTGCTGACCAACGAGGTGTCCATCGAGCGCAAGGTCAAGGAAGCCATCCTGGCGCTGCGCATCGAACGCACCTTC TCCAAGGACCACATCCTCGAGCTTTATCTCAACGAGATCTATCTGGGCAGCGGCGCCTATGGCGTGGCGGCGGCGGCGCT GAACTATTTCGACAAGGGCCTGGACGAGCTGAACGTGGCCGAGGCCGCCTATCTTGCCGCCCTGCCCAAGGCGCCCAACA ATTACAATCCCCATCGCCACCCCCAGGCCGCCAAGGAGCGCCGGGACTGGGTGATCGGGCGCCTGTTCGAGGACGGCAAG ATCACCCAGGCCGAGTATCAGGCCATGGTCGCCATGCCGCTGGAGGTCCGCACCCGCAAGGAGATGCAGGCCACCCAGGG CGGCGATTACTTCGCCGAGGACATTCGCCGCGAATTACAGGCCAAGTACGGCGAATCGGCCCTGTGGAAGGGCGGTCTGG TGGTGCGCGCCTCCATGGACGCCCATCTCCAGGCGGTGGGCTCTCGGGTGCTGCGCCAGGGCCTTGCCGCCTATGACCGG CGCCACGGCTGGCGCGGTCCCATCACCCGCATTCCCGCCGCCGCCGGCTGGGGGCCGCTGCTGGCCGCCGTGCCGCGCCC GGGCGGCGCTGACGAGGCGTGGCAGACCGCCGTCGTGCTGGCGCTGACCGACCACGAGGCGACCCTGGGCCTGGTGGGCG GCAAGGTCGGCCATGTGCCCTTCGCCGAGATGAAATGGGCGCGCCCCACCCTGGAGAGGTCGGCCACGGGGCCGTTCCCC CGCAAGCCCGCCGACGTGGTGGCGTTGGGCGACGTCATCCTGGTGGAGCCGGTGGCCAAGGGGGACGACGGCAAGCCCTA TCCCGCCAATTTCTTCACCTTGCGCCAGATTCCCAAGGTGGAGGGCGCCCTGGTGGCCATCGACCCCCATACCGGCCGCG TCATGGCCATGGTGGGCGGCTGGTCCTATGGCAAGAGCCAGTTCAACCGCGCCTCCCAGGCCATGCGCCAGACCGGCTCG TCCTTCAAGCCCTTCATCTATCTGGCGGCGCTGGAAAGCGGCTATACCCCGTCGTCCCTGGTGCTGGACGCGCCCATCGC CCTGCCCCAGGGGCCGGGCCTGCCGCTGTGGCGTCCCAAGAACTACCACGACGACTATCTCGGCCCGACCACGCTGCGCG TCGGCATCGAGAAGTCGCGCAACCTGATGACCGTGCGCCTCGCCCAGGCGCTGGGCATGGACAAGGTGGCCGATTACGCC GGACGCTTCGGCATCTATGACAACCTGCCCCGTCAGCTGTCCATGGCGCTGGGCGCCGGCGAGACCACGCCGCTACGCCT CACCGCCGCTTATGCCATGCTGGTCAACGGCGGCAAGAAGGTGCGCCCCACCCTGATCGACCGCATCCAGGATCGCAACG GCAAGACCATCTTCAGCCACGACCTGCGCTTCTGCGACGGCTGCTCGGCCAATCGCTTCACCGGCCAGGACATGCCGCTT CTGCCCGACATCCGCGAGCAGATGGTCGATCCCGTCTCCGCCTATCAGATGGTCTCGATCCTGGAAGGCGTGGTCCAGCG CGGCACCGGCACCTCGGTCAAGCCGGTGGGTAAGCCCCTGGCGGGCAAGACCGGCACCTCCAACGATTCCAACGACGTGT GGTTCGTGGGATTCTCGCCTGATCTGGCGGTGGGCGTATTCGTCGGCTTCGACGAGCCCGGCACCCTGGGCGCCAAGGAA ACCGGCGGCTCCATCGCCGCCCCCATCTTCCGCGACTTCATGATGGAAGCGCTGAAAGACAAGCCGCCCACCCCGTTCCG CGTGCCGTCCGGCGTGCGGCTGGTGCGCGTCAACGCTCATACCGGCAAGCCGGCCATGCCCGGCGACGCCAAGGCCATTT ACGAGGCCTTCAAGGGCTCCGATCGCATGCCCGGCGACGAGGAAGACGTGCTGGAAGGCTCTGGCGGCATCGATGCCGGC TTCAGTTTCGCGCCTTTCCTGGGGGCGGAAGAGGGGGCGAGCGGCGTGCAGCTTACCCCGCCGCCCGGCACTCCCGGCCC CGACGGCACCATTCCCGCCGCGCCGCAGCAGCAGCAGGCTCCGACCGGTCCGGCACCTTCGGCGGGTGGGCTGTACTAG
Upstream 100 bases:
>100_bases TGGGGATGGACAGCCGATTTTAACGGCTGCATCCTCCCCGCACTTGACGCCGGAGGCCGCGAGGCGGTACCACCAGCCCA AACCGCAAGGCACCGCCCTC
Downstream 100 bases:
>100_bases GGCTTGAGCTGCGGCAAAACCCCGCTTCGCGGCAGGGCTACCGCCCAGACCCGTTCGGAGGCACAGCCTCCGAACCACCA GCTTTTTTCGATCTCAATGG
Product: membrane carboxypeptidase/penicillin-binding protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MYRFFLGLFSLLILLAIVGAGGVLFVFWHFGRGLPDYHQLAHYEPPITTRVYGGDGRLVAEYAVEKRVFVPLPVIPQLVK DAFLSAEDKNFYTHAGIDPVGIARAIVVNLKNRGKGADRRPVGASTITQQVAKNFLLTNEVSIERKVKEAILALRIERTF SKDHILELYLNEIYLGSGAYGVAAAALNYFDKGLDELNVAEAAYLAALPKAPNNYNPHRHPQAAKERRDWVIGRLFEDGK ITQAEYQAMVAMPLEVRTRKEMQATQGGDYFAEDIRRELQAKYGESALWKGGLVVRASMDAHLQAVGSRVLRQGLAAYDR RHGWRGPITRIPAAAGWGPLLAAVPRPGGADEAWQTAVVLALTDHEATLGLVGGKVGHVPFAEMKWARPTLERSATGPFP RKPADVVALGDVILVEPVAKGDDGKPYPANFFTLRQIPKVEGALVAIDPHTGRVMAMVGGWSYGKSQFNRASQAMRQTGS SFKPFIYLAALESGYTPSSLVLDAPIALPQGPGLPLWRPKNYHDDYLGPTTLRVGIEKSRNLMTVRLAQALGMDKVADYA GRFGIYDNLPRQLSMALGAGETTPLRLTAAYAMLVNGGKKVRPTLIDRIQDRNGKTIFSHDLRFCDGCSANRFTGQDMPL LPDIREQMVDPVSAYQMVSILEGVVQRGTGTSVKPVGKPLAGKTGTSNDSNDVWFVGFSPDLAVGVFVGFDEPGTLGAKE TGGSIAAPIFRDFMMEALKDKPPTPFRVPSGVRLVRVNAHTGKPAMPGDAKAIYEAFKGSDRMPGDEEDVLEGSGGIDAG FSFAPFLGAEEGASGVQLTPPPGTPGPDGTIPAAPQQQQAPTGPAPSAGGLY
Sequences:
>Translated_852_residues MYRFFLGLFSLLILLAIVGAGGVLFVFWHFGRGLPDYHQLAHYEPPITTRVYGGDGRLVAEYAVEKRVFVPLPVIPQLVK DAFLSAEDKNFYTHAGIDPVGIARAIVVNLKNRGKGADRRPVGASTITQQVAKNFLLTNEVSIERKVKEAILALRIERTF SKDHILELYLNEIYLGSGAYGVAAAALNYFDKGLDELNVAEAAYLAALPKAPNNYNPHRHPQAAKERRDWVIGRLFEDGK ITQAEYQAMVAMPLEVRTRKEMQATQGGDYFAEDIRRELQAKYGESALWKGGLVVRASMDAHLQAVGSRVLRQGLAAYDR RHGWRGPITRIPAAAGWGPLLAAVPRPGGADEAWQTAVVLALTDHEATLGLVGGKVGHVPFAEMKWARPTLERSATGPFP RKPADVVALGDVILVEPVAKGDDGKPYPANFFTLRQIPKVEGALVAIDPHTGRVMAMVGGWSYGKSQFNRASQAMRQTGS SFKPFIYLAALESGYTPSSLVLDAPIALPQGPGLPLWRPKNYHDDYLGPTTLRVGIEKSRNLMTVRLAQALGMDKVADYA GRFGIYDNLPRQLSMALGAGETTPLRLTAAYAMLVNGGKKVRPTLIDRIQDRNGKTIFSHDLRFCDGCSANRFTGQDMPL LPDIREQMVDPVSAYQMVSILEGVVQRGTGTSVKPVGKPLAGKTGTSNDSNDVWFVGFSPDLAVGVFVGFDEPGTLGAKE TGGSIAAPIFRDFMMEALKDKPPTPFRVPSGVRLVRVNAHTGKPAMPGDAKAIYEAFKGSDRMPGDEEDVLEGSGGIDAG FSFAPFLGAEEGASGVQLTPPPGTPGPDGTIPAAPQQQQAPTGPAPSAGGLY >Mature_852_residues MYRFFLGLFSLLILLAIVGAGGVLFVFWHFGRGLPDYHQLAHYEPPITTRVYGGDGRLVAEYAVEKRVFVPLPVIPQLVK DAFLSAEDKNFYTHAGIDPVGIARAIVVNLKNRGKGADRRPVGASTITQQVAKNFLLTNEVSIERKVKEAILALRIERTF SKDHILELYLNEIYLGSGAYGVAAAALNYFDKGLDELNVAEAAYLAALPKAPNNYNPHRHPQAAKERRDWVIGRLFEDGK ITQAEYQAMVAMPLEVRTRKEMQATQGGDYFAEDIRRELQAKYGESALWKGGLVVRASMDAHLQAVGSRVLRQGLAAYDR RHGWRGPITRIPAAAGWGPLLAAVPRPGGADEAWQTAVVLALTDHEATLGLVGGKVGHVPFAEMKWARPTLERSATGPFP RKPADVVALGDVILVEPVAKGDDGKPYPANFFTLRQIPKVEGALVAIDPHTGRVMAMVGGWSYGKSQFNRASQAMRQTGS SFKPFIYLAALESGYTPSSLVLDAPIALPQGPGLPLWRPKNYHDDYLGPTTLRVGIEKSRNLMTVRLAQALGMDKVADYA GRFGIYDNLPRQLSMALGAGETTPLRLTAAYAMLVNGGKKVRPTLIDRIQDRNGKTIFSHDLRFCDGCSANRFTGQDMPL LPDIREQMVDPVSAYQMVSILEGVVQRGTGTSVKPVGKPLAGKTGTSNDSNDVWFVGFSPDLAVGVFVGFDEPGTLGAKE TGGSIAAPIFRDFMMEALKDKPPTPFRVPSGVRLVRVNAHTGKPAMPGDAKAIYEAFKGSDRMPGDEEDVLEGSGGIDAG FSFAPFLGAEEGASGVQLTPPPGTPGPDGTIPAAPQQQQAPTGPAPSAGGLY
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=841, Percent_Identity=33.5315101070155, Blast_Score=429, Evalue=1e-121, Organism=Escherichia coli, GI1786343, Length=262, Percent_Identity=37.0229007633588, Blast_Score=149, Evalue=5e-37, Organism=Escherichia coli, GI1789601, Length=233, Percent_Identity=33.0472103004292, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1788867, Length=230, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 91933; Mature: 91933
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRFFLGLFSLLILLAIVGAGGVLFVFWHFGRGLPDYHQLAHYEPPITTRVYGGDGRLVA CHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCHHHHHHCCCCCCEEEEECCCCCEEE EYAVEKRVFVPLPVIPQLVKDAFLSAEDKNFYTHAGIDPVGIARAIVVNLKNRGKGADRR EEHHCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHEEEECCCCCCCCCC PVGASTITQQVAKNFLLTNEVSIERKVKEAILALRIERTFSKDHILELYLNEIYLGSGAY CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCH GVAAAALNYFDKGLDELNVAEAAYLAALPKAPNNYNPHRHPQAAKERRDWVIGRLFEDGK HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCC ITQAEYQAMVAMPLEVRTRKEMQATQGGDYFAEDIRRELQAKYGESALWKGGLVVRASMD CCHHHHHHHEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEECHH AHLQAVGSRVLRQGLAAYDRRHGWRGPITRIPAAAGWGPLLAAVPRPGGADEAWQTAVVL HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHCCCCCCCCCHHHCEEEEE ALTDHEATLGLVGGKVGHVPFAEMKWARPTLERSATGPFPRKPADVVALGDVILVEPVAK EEECCCCEEEEECCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCEEEECCEEEEEECCC GDDGKPYPANFFTLRQIPKVEGALVAIDPHTGRVMAMVGGWSYGKSQFNRASQAMRQTGS CCCCCCCCCCEEEHHHCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC SFKPFIYLAALESGYTPSSLVLDAPIALPQGPGLPLWRPKNYHDDYLGPTTLRVGIEKSR CCCCEEEEEEHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC NLMTVRLAQALGMDKVADYAGRFGIYDNLPRQLSMALGAGETTPLRLTAAYAMLVNGGKK CEEEEHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCC VRPTLIDRIQDRNGKTIFSHDLRFCDGCSANRFTGQDMPLLPDIREQMVDPVSAYQMVSI CCHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHH LEGVVQRGTGTSVKPVGKPLAGKTGTSNDSNDVWFVGFSPDLAVGVFVGFDEPGTLGAKE HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC TGGSIAAPIFRDFMMEALKDKPPTPFRVPSGVRLVRVNAHTGKPAMPGDAKAIYEAFKGS CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC DRMPGDEEDVLEGSGGIDAGFSFAPFLGAEEGASGVQLTPPPGTPGPDGTIPAAPQQQQA CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC PTGPAPSAGGLY CCCCCCCCCCCC >Mature Secondary Structure MYRFFLGLFSLLILLAIVGAGGVLFVFWHFGRGLPDYHQLAHYEPPITTRVYGGDGRLVA CHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCHHHHHHCCCCCCEEEEECCCCCEEE EYAVEKRVFVPLPVIPQLVKDAFLSAEDKNFYTHAGIDPVGIARAIVVNLKNRGKGADRR EEHHCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHEEEECCCCCCCCCC PVGASTITQQVAKNFLLTNEVSIERKVKEAILALRIERTFSKDHILELYLNEIYLGSGAY CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCH GVAAAALNYFDKGLDELNVAEAAYLAALPKAPNNYNPHRHPQAAKERRDWVIGRLFEDGK HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCC ITQAEYQAMVAMPLEVRTRKEMQATQGGDYFAEDIRRELQAKYGESALWKGGLVVRASMD CCHHHHHHHEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEECHH AHLQAVGSRVLRQGLAAYDRRHGWRGPITRIPAAAGWGPLLAAVPRPGGADEAWQTAVVL HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHCCCCCCCCCHHHCEEEEE ALTDHEATLGLVGGKVGHVPFAEMKWARPTLERSATGPFPRKPADVVALGDVILVEPVAK EEECCCCEEEEECCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCEEEECCEEEEEECCC GDDGKPYPANFFTLRQIPKVEGALVAIDPHTGRVMAMVGGWSYGKSQFNRASQAMRQTGS CCCCCCCCCCEEEHHHCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC SFKPFIYLAALESGYTPSSLVLDAPIALPQGPGLPLWRPKNYHDDYLGPTTLRVGIEKSR CCCCEEEEEEHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC NLMTVRLAQALGMDKVADYAGRFGIYDNLPRQLSMALGAGETTPLRLTAAYAMLVNGGKK CEEEEHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCC VRPTLIDRIQDRNGKTIFSHDLRFCDGCSANRFTGQDMPLLPDIREQMVDPVSAYQMVSI CCHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHH LEGVVQRGTGTSVKPVGKPLAGKTGTSNDSNDVWFVGFSPDLAVGVFVGFDEPGTLGAKE HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC TGGSIAAPIFRDFMMEALKDKPPTPFRVPSGVRLVRVNAHTGKPAMPGDAKAIYEAFKGS CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC DRMPGDEEDVLEGSGGIDAGFSFAPFLGAEEGASGVQLTPPPGTPGPDGTIPAAPQQQQA CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC PTGPAPSAGGLY CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]