Click here to switch to the map view.

The map label for this gene is ymdB [H]

Identifier: 83312322

GI number: 83312322

Start: 3486666

End: 3487484

Strand: Reverse

Name: ymdB [H]

Synonym: amb3223

Alternate gene names: 83312322

Gene position: 3487484-3486666 (Counterclockwise)

Preceding gene: 83312323

Following gene: 83312321

Centisome position: 70.21

GC content: 67.89

Gene sequence:

>819_bases
ATGAGACTTCTGTACATGGGTGACGTGGTCGGCCGTTCGGGCCGCGACGTGATCGTCGGGCGCATGGCCGAGATCAAGAA
CCGCCTTTCCCCCGACTTCATCGTCGTCAATGGCGAGAACGCCGCCCACGGCTTCGGCATCACGCCCAAGATCTGCGAGG
ATTTTTTCGCCGTCGGGGTGGATGTGGTGACCCTGGGCAACCACACCTGGGACCAGCGCGAGATCATCCCCTTCCTGGAT
GGCGAGGCCCGCGTGCTGCGGCCGCTCAACTACCCTTCCGGCACGCCGGGTCACGGAACCGGGGTCTTTGCGGGTCCCCG
CGGGCGCAAGGTGATGGTGGTTCAGGTCATGGGCCGGCTGTTCATGGACCCTCTGGACGACCCCTTCACCGCGCTGGACT
CCGTGCTGGCCAAGGCCCGCATGGGCGCCGGCGGCGTCGATGCCATCATCGTTGATGTCCACGCCGAGGCGTCCAGCGAG
AAGATGGCGCTGGGGCACCTCTCGGACGGGCGGGCCAGTCTGGTGGTGGGCAGCCATTCCCACGTGCCGACCGCCGATTG
CCAGATCCTGGCCAAGGGCACCGCCTACCAGACCGACGCGGGCATGTGCGGCGACTATGATTCGGTGATCGGCATGAAGA
AGGATGCCGCCATCTTCAAGTTCGTGCGCAAGATCCCGGGCGAGCGCCTGTCGCCGGCCGAGGGGCCGGGGACCCTGTGC
GCGGTGATGGTGGAAACCGACGACCGCACCGGCCTGGCCCGGCGCGTCGCGCCGCTGCGCCTGGGCGGACGCCTGGCGGA
GTGTTGGCCCGACTGGTGA

Upstream 100 bases:

>100_bases
CCTTCGCCGCCCAGGAGGTGGACACTGTTCCCACCGACCCCTGGGATATCGCTTTGGATCTCATAGCCACGGAGCATGGC
GTGATCGTGACGGCCGCTAA

Downstream 100 bases:

>100_bases
AAGCTTTCGGTCAGGGGGATGTCTATATGGTCCGGCACCGTTTTGCCGAACATGAGGAGGGACGATGATCATGCTGCGTC
TGATGGGTTTGCTGGTCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRLLYMGDVVGRSGRDVIVGRMAEIKNRLSPDFIVVNGENAAHGFGITPKICEDFFAVGVDVVTLGNHTWDQREIIPFLD
GEARVLRPLNYPSGTPGHGTGVFAGPRGRKVMVVQVMGRLFMDPLDDPFTALDSVLAKARMGAGGVDAIIVDVHAEASSE
KMALGHLSDGRASLVVGSHSHVPTADCQILAKGTAYQTDAGMCGDYDSVIGMKKDAAIFKFVRKIPGERLSPAEGPGTLC
AVMVETDDRTGLARRVAPLRLGGRLAECWPDW

Sequences:

>Translated_272_residues
MRLLYMGDVVGRSGRDVIVGRMAEIKNRLSPDFIVVNGENAAHGFGITPKICEDFFAVGVDVVTLGNHTWDQREIIPFLD
GEARVLRPLNYPSGTPGHGTGVFAGPRGRKVMVVQVMGRLFMDPLDDPFTALDSVLAKARMGAGGVDAIIVDVHAEASSE
KMALGHLSDGRASLVVGSHSHVPTADCQILAKGTAYQTDAGMCGDYDSVIGMKKDAAIFKFVRKIPGERLSPAEGPGTLC
AVMVETDDRTGLARRVAPLRLGGRLAECWPDW
>Mature_272_residues
MRLLYMGDVVGRSGRDVIVGRMAEIKNRLSPDFIVVNGENAAHGFGITPKICEDFFAVGVDVVTLGNHTWDQREIIPFLD
GEARVLRPLNYPSGTPGHGTGVFAGPRGRKVMVVQVMGRLFMDPLDDPFTALDSVLAKARMGAGGVDAIIVDVHAEASSE
KMALGHLSDGRASLVVGSHSHVPTADCQILAKGTAYQTDAGMCGDYDSVIGMKKDAAIFKFVRKIPGERLSPAEGPGTLC
AVMVETDDRTGLARRVAPLRLGGRLAECWPDW

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29130; Mature: 29130

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLYMGDVVGRSGRDVIVGRMAEIKNRLSPDFIVVNGENAAHGFGITPKICEDFFAVGV
CEEEEECHHHCCCCCEEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCE
DVVTLGNHTWDQREIIPFLDGEARVLRPLNYPSGTPGHGTGVFAGPRGRKVMVVQVMGRL
EEEEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEHHHHHHHH
FMDPLDDPFTALDSVLAKARMGAGGVDAIIVDVHAEASSEKMALGHLSDGRASLVVGSHS
HCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
HVPTADCQILAKGTAYQTDAGMCGDYDSVIGMKKDAAIFKFVRKIPGERLSPAEGPGTLC
CCCCCCEEEEECCCEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE
AVMVETDDRTGLARRVAPLRLGGRLAECWPDW
EEEEECCCCCCHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MRLLYMGDVVGRSGRDVIVGRMAEIKNRLSPDFIVVNGENAAHGFGITPKICEDFFAVGV
CEEEEECHHHCCCCCEEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCE
DVVTLGNHTWDQREIIPFLDGEARVLRPLNYPSGTPGHGTGVFAGPRGRKVMVVQVMGRL
EEEEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEHHHHHHHH
FMDPLDDPFTALDSVLAKARMGAGGVDAIIVDVHAEASSEKMALGHLSDGRASLVVGSHS
HCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
HVPTADCQILAKGTAYQTDAGMCGDYDSVIGMKKDAAIFKFVRKIPGERLSPAEGPGTLC
CCCCCCEEEEECCCEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE
AVMVETDDRTGLARRVAPLRLGGRLAECWPDW
EEEEECCCCCCHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]