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The map label for this gene is yedY

Identifier: 83312169

GI number: 83312169

Start: 3319617

End: 3320543

Strand: Reverse

Name: yedY

Synonym: amb3070

Alternate gene names: 83312169

Gene position: 3320543-3319617 (Counterclockwise)

Preceding gene: 83312170

Following gene: 83312168

Centisome position: 66.85

GC content: 65.7

Gene sequence:

>927_bases
ATGCTGATCAGATCCGCTGCGGACTTGCGCGAATCCGAGGTGACCGACAAGGCTCTGTGGCTGGATCGTCGCCGCTTCCT
GGCGCTGGGGGCGGCGGGCGCCCTGGCGCTGTCTGGCCTTCCGGCCGAGGCGGGGCTGAACACGGTCAAGGGGCCGTTCT
CCACCGACGAGCCGCCCACCCCCCGAAAGGACGTCACCACCTACAACAACTTCTATGAGCTGGGGGTGGAGAAGTCCGAT
CCCGCCCAACTGGCGCCCAGCTATTTCACCAAGACCAGACCGTGGAGCGTCACCATCGCCGGGGAATGCGCCAAGCCCGG
CACCCTGGGCTACGAGGATCTGATCAAGCCGCACCGGCTGGAGGACCGCATCTACCGCATGCGCTGCGTCGAAGCCTGGT
CCATGGTGATCCCCTGGGTGGGCATTCCCCTGGGCGAGGTGCTGAAGCGCTTCGAGCCCGGCTCCAAGGCCAAGTTCGTG
GAATTCACCACCCTGCAGGACCCCGAGCGCCTGCCGGGCCAGCGCCGCTCCGTCATCGACTGGCCCTATGTGGAGGGCCT
GAGGATCGACGAGGCCATGCATCCGCTGGCCCTGCTGGCGGTGGGACTGTACGGCGAGGAATTGCTGCCCCAGAACGGCG
CGCCCATCCGGCTGGTGGTGCCGTGGAAATACGGGTTCAAATCCATCAAGTCGATCGTCGCCATCCGCTTTGCCGAGACG
CCGTCCAGGACCGCCTGGATGAAGGCGGCGCCGCGGGAATACGGCTTTTACGCCAACGTCAATCCGGCCGTGGACCATCC
GCGCTGGAGCCAGGGAGCCGAGCGGCGCATCGGCGAATTCCTGAAGCGCAAGACACTGCCGTTCAACGGCTATGCCGATC
AGGTGGCCTCGCTCTATTCCGGCATGGATCTGGCGGCGAATTTCTGA

Upstream 100 bases:

>100_bases
CGATGCCGATTGGCAGGCGGTGAAACGGATCTGTTCCAAAAAGTCGCCATAATCCCCATGTAATCGGCGAGGGACATTCA
GGGCAGGTGGAGAGACGGAC

Downstream 100 bases:

>100_bases
TGGACAAGCTGCTGCGCCAAGGCTGGGTCAAGCCCCTGCTGTTCGCCGTCTGCCTGATCCCGCTGGGCCTCCTGGTCTGG
CGGGGCGCTTCCGGCGGGCT

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLIRSAADLRESEVTDKALWLDRRRFLALGAAGALALSGLPAEAGLNTVKGPFSTDEPPTPRKDVTTYNNFYELGVEKSD
PAQLAPSYFTKTRPWSVTIAGECAKPGTLGYEDLIKPHRLEDRIYRMRCVEAWSMVIPWVGIPLGEVLKRFEPGSKAKFV
EFTTLQDPERLPGQRRSVIDWPYVEGLRIDEAMHPLALLAVGLYGEELLPQNGAPIRLVVPWKYGFKSIKSIVAIRFAET
PSRTAWMKAAPREYGFYANVNPAVDHPRWSQGAERRIGEFLKRKTLPFNGYADQVASLYSGMDLAANF

Sequences:

>Translated_308_residues
MLIRSAADLRESEVTDKALWLDRRRFLALGAAGALALSGLPAEAGLNTVKGPFSTDEPPTPRKDVTTYNNFYELGVEKSD
PAQLAPSYFTKTRPWSVTIAGECAKPGTLGYEDLIKPHRLEDRIYRMRCVEAWSMVIPWVGIPLGEVLKRFEPGSKAKFV
EFTTLQDPERLPGQRRSVIDWPYVEGLRIDEAMHPLALLAVGLYGEELLPQNGAPIRLVVPWKYGFKSIKSIVAIRFAET
PSRTAWMKAAPREYGFYANVNPAVDHPRWSQGAERRIGEFLKRKTLPFNGYADQVASLYSGMDLAANF
>Mature_308_residues
MLIRSAADLRESEVTDKALWLDRRRFLALGAAGALALSGLPAEAGLNTVKGPFSTDEPPTPRKDVTTYNNFYELGVEKSD
PAQLAPSYFTKTRPWSVTIAGECAKPGTLGYEDLIKPHRLEDRIYRMRCVEAWSMVIPWVGIPLGEVLKRFEPGSKAKFV
EFTTLQDPERLPGQRRSVIDWPYVEGLRIDEAMHPLALLAVGLYGEELLPQNGAPIRLVVPWKYGFKSIKSIVAIRFAET
PSRTAWMKAAPREYGFYANVNPAVDHPRWSQGAERRIGEFLKRKTLPFNGYADQVASLYSGMDLAANF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family

Homologues:

Organism=Escherichia coli, GI1788282, Length=331, Percent_Identity=51.6616314199396, Blast_Score=312, Evalue=2e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEDY_MAGSA (Q2W2Q1)

Other databases:

- EMBL:   AP007255
- RefSeq:   YP_422433.1
- ProteinModelPortal:   Q2W2Q1
- SMR:   Q2W2Q1
- STRING:   Q2W2Q1
- GeneID:   3804554
- GenomeReviews:   AP007255_GR
- KEGG:   mag:amb3070
- NMPDR:   fig|342108.5.peg.2751
- eggNOG:   COG2041
- HOGENOM:   HBG287041
- OMA:   HYNNFYE
- PhylomeDB:   Q2W2Q1
- ProtClustDB:   PRK05363
- BioCyc:   MMAG342108:AMB3070-MONOMER
- HAMAP:   MF_01206
- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867
- Gene3D:   G3DSA:3.90.420.10
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF00174 Oxidored_molyb; SSF56524 Oxidored_molyb

EC number: NA

Molecular weight: Translated: 34504; Mature: 34504

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS51318 TAT

Important sites: BINDING 69-69 BINDING 164-164 BINDING 212-212 BINDING 217-217

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRSAADLRESEVTDKALWLDRRRFLALGAAGALALSGLPAEAGLNTVKGPFSTDEPPT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
PRKDVTTYNNFYELGVEKSDPAQLAPSYFTKTRPWSVTIAGECAKPGTLGYEDLIKPHRL
CCCCCCCCCCCEEECCCCCCCHHHCHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCHHH
EDRIYRMRCVEAWSMVIPWVGIPLGEVLKRFEPGSKAKFVEFTTLQDPERLPGQRRSVID
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCC
WPYVEGLRIDEAMHPLALLAVGLYGEELLPQNGAPIRLVVPWKYGFKSIKSIVAIRFAET
CCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
PSRTAWMKAAPREYGFYANVNPAVDHPRWSQGAERRIGEFLKRKTLPFNGYADQVASLYS
CCCHHHHHCCCHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GMDLAANF
CCHHHCCC
>Mature Secondary Structure
MLIRSAADLRESEVTDKALWLDRRRFLALGAAGALALSGLPAEAGLNTVKGPFSTDEPPT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
PRKDVTTYNNFYELGVEKSDPAQLAPSYFTKTRPWSVTIAGECAKPGTLGYEDLIKPHRL
CCCCCCCCCCCEEECCCCCCCHHHCHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCHHH
EDRIYRMRCVEAWSMVIPWVGIPLGEVLKRFEPGSKAKFVEFTTLQDPERLPGQRRSVID
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCC
WPYVEGLRIDEAMHPLALLAVGLYGEELLPQNGAPIRLVVPWKYGFKSIKSIVAIRFAET
CCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
PSRTAWMKAAPREYGFYANVNPAVDHPRWSQGAERRIGEFLKRKTLPFNGYADQVASLYS
CCCHHHHHCCCHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GMDLAANF
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA