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The map label for this gene is ygaE [C]

Identifier: 83312158

GI number: 83312158

Start: 3302147

End: 3302857

Strand: Reverse

Name: ygaE [C]

Synonym: amb3059

Alternate gene names: 83312158

Gene position: 3302857-3302147 (Counterclockwise)

Preceding gene: 83312159

Following gene: 83312149

Centisome position: 66.49

GC content: 69.62

Gene sequence:

>711_bases
GTGTTGCGTGACTTCGGCGTGAGGATTGGATTGAGCACGATAGGAATGAGCCGGGTGCGCAGGCCCAAGGATCCTACGGA
ATTGTCCGCGGCGGAGTGGGTCCGTCAACAGCTGATCGACGATATCGTGGCCGGTCGGCTTCGTCCGGGCGAGAAGCTGT
GCGAGGTGAAGATCGCGGCGCGGCTGGGCTGTTCCCGCACCCCGGTGCGCGAGGCGTTCCGGCACCTCGGGGCCTTGGGC
CTGGCCAATTTCGAGAAGAATCGCGGCGGCAACGTGGTGCGGCTGGAACGCGCCCAGATGCTGGAGCTGTTCGAGGCACT
GGCGGAAGTGGCGGCCTCCTGCGCCGGGCTTGCCGCCTCCCGCGGGGAGGCGCGGCGCCGAATTCTGGAGGAGCAGGGCC
GCCTGGACCATATCGCCGTTCCGGCGGGCACCGGCGGCGAAGGCGATCTCTTTACCACCGTATTCGACATCTGCGGCAAT
CAGTTGCTGGCGGCGTCGGGCAGTGCGATCCGCTGCCGTCTGCTGCCCTATTGGCGGCTGCTGGGCTCGACCGCCGATGA
CTGGGCCTCGCACGGCGGCCTGGGCCAGGCCGCGGCGATCCGGGCCATTGCCGCCGGTGATGGAAGGGCGGCCCGGCGGG
CCATGCGGACCTTCGTGCTGATGGCCCGCGATCACGCGGTGCGGGGGGTGCCCCCGTCCGCCTTGCCCTGA

Upstream 100 bases:

>100_bases
CGGCAAGCGCGTAAAGTGCTTGCTGTATACAATCTCAGAATGCAATCTACAGAAATGCGTCCGTGACGTTGGTTGTGCTT
GCATGTAAAGCACGCAAAAC

Downstream 100 bases:

>100_bases
GCGCCGTTTCCAGACCATCGAGCGTCAAATATGACGCACGATGGTCCAGGTTCATGTTTGCCCCTCGCCGGGCGCAGCCT
TCCGGCCGCTTGGCCGCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator GntR Family; Transcriptional Regulator Protein GntR Family

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLRDFGVRIGLSTIGMSRVRRPKDPTELSAAEWVRQQLIDDIVAGRLRPGEKLCEVKIAARLGCSRTPVREAFRHLGALG
LANFEKNRGGNVVRLERAQMLELFEALAEVAASCAGLAASRGEARRRILEEQGRLDHIAVPAGTGGEGDLFTTVFDICGN
QLLAASGSAIRCRLLPYWRLLGSTADDWASHGGLGQAAAIRAIAAGDGRAARRAMRTFVLMARDHAVRGVPPSALP

Sequences:

>Translated_236_residues
MLRDFGVRIGLSTIGMSRVRRPKDPTELSAAEWVRQQLIDDIVAGRLRPGEKLCEVKIAARLGCSRTPVREAFRHLGALG
LANFEKNRGGNVVRLERAQMLELFEALAEVAASCAGLAASRGEARRRILEEQGRLDHIAVPAGTGGEGDLFTTVFDICGN
QLLAASGSAIRCRLLPYWRLLGSTADDWASHGGLGQAAAIRAIAAGDGRAARRAMRTFVLMARDHAVRGVPPSALP
>Mature_236_residues
MLRDFGVRIGLSTIGMSRVRRPKDPTELSAAEWVRQQLIDDIVAGRLRPGEKLCEVKIAARLGCSRTPVREAFRHLGALG
LANFEKNRGGNVVRLERAQMLELFEALAEVAASCAGLAASRGEARRRILEEQGRLDHIAVPAGTGGEGDLFTTVFDICGN
QLLAASGSAIRCRLLPYWRLLGSTADDWASHGGLGQAAAIRAIAAGDGRAARRAMRTFVLMARDHAVRGVPPSALP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25359; Mature: 25359

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDFGVRIGLSTIGMSRVRRPKDPTELSAAEWVRQQLIDDIVAGRLRPGEKLCEVKIAA
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RLGCSRTPVREAFRHLGALGLANFEKNRGGNVVRLERAQMLELFEALAEVAASCAGLAAS
HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RGEARRRILEEQGRLDHIAVPAGTGGEGDLFTTVFDICGNQLLAASGSAIRCRLLPYWRL
HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEEHHHHHHH
LGSTADDWASHGGLGQAAAIRAIAAGDGRAARRAMRTFVLMARDHAVRGVPPSALP
HCCCHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLRDFGVRIGLSTIGMSRVRRPKDPTELSAAEWVRQQLIDDIVAGRLRPGEKLCEVKIAA
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RLGCSRTPVREAFRHLGALGLANFEKNRGGNVVRLERAQMLELFEALAEVAASCAGLAAS
HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RGEARRRILEEQGRLDHIAVPAGTGGEGDLFTTVFDICGNQLLAASGSAIRCRLLPYWRL
HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEEHHHHHHH
LGSTADDWASHGGLGQAAAIRAIAAGDGRAARRAMRTFVLMARDHAVRGVPPSALP
HCCCHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA