| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is pbpC [H]
Identifier: 83312064
GI number: 83312064
Start: 3186078
End: 3188435
Strand: Reverse
Name: pbpC [H]
Synonym: amb2965
Alternate gene names: 83312064
Gene position: 3188435-3186078 (Counterclockwise)
Preceding gene: 83312065
Following gene: 83312049
Centisome position: 64.19
GC content: 71.88
Gene sequence:
>2358_bases GTGACCCGGGGCCGCCGGGCCGTCTGGGCTGTCCTGGCGGGGCTGGTCCTCGCCGTGGCGGTCCTGTGGCCGCGTGCCGA TCTCACGGCGCCGGCGGCGACCCGCATCCTGCTCGACCGTCACGGCGCCTTTCTGGCCCAGGTGGGGGGGCGCGACGGCA CCCTTTACGGCTATTGGCCGGTGGAGCGGGTGCCCGAGCGGGTAGCGGCGGCCATCATCGCCATCGAGGACCGCCGGTTC GGCCGCCATGGCGGAGTCGATCCCATCGCCTTAGTGCGGGCGGGGATCGAGCGGCTGCGCGGCGACGGCCGCTCGGGGGC CTCGACCATCGCCATGCAGGTGGCGCGCATGCAGGCTCCCGGACCGCGCACCCTGCCGCGCAAGCTGCTGGAGGCGGCCA CCGCCACGCTGATGGTGGCCCGCCACGGGCGCGACGAGGTTTTGCGGCATTATCTGCGGCTGGTGCCCTTCGGCAACGGC AGCCACGGCATCGCCCACGCCGCCCGCTGGTACCTGGACAAGCCGGTGGAGGACCTGTCCTGGGCCGAGATCGCCTTCCT GTCCGCCATTCCCCAGGCGCCGGGGCGGATGAACCCCTTCACCCGCGAGGGCAAGGCGCGGGCGGTGCGGCGCGGCCATC GCATCCTGGCTCATCTGCACGAATCCGGGCTCATGGGGGCCGGGGAATTCGCCCTGGCCGAAAGACAGATCGAGCATCTG GCCATTCCCCGTCACGGCCGCCGCCCGGCCGAGATGATCCATCCGGTGCTGCGGCTGCAGCGCGCCCTGGCCGCCTCCCA GGCGCCGGTGCCGCCGCTGGTGCCCACCACCCTCGATCTGGCCACCCAGCGCCGGGTGCACGATGCCGCGTCCCGGCAGA TGCCCGACTGGCGCTCCCGGGGCGCCGAGCAGGTGGCGGTGGTGGTCATGGACCGCGCCAGCCGCGAGGTCCTGGCCTGG CTGGGCTCGGAGAGCTATTTTTCCCCCCAGGCCGGGGCCATCGACTTCACGGCGGTCAGCCGCTCGCCCGGCAGTGCCTT GAAGCCGTTCATCTACGCCCTGGCGCTCGATCGCGGCCGCATCGCCGCCAACACCATCCTGGCCGATCTGCCCGAGACCC AGTGGGGCATCGACAATTCCGACCACGATTATCTCGGCCCCATGCTGCCGCGTCAGGCCCTGGCCAACTCGCGCAATGTT CCCGCCGTGTCGGTGCTGCGCCAGGCGGGGCTGGACGAGACCCATCTGTTCCTGTCCACCCTGGGGCTGCACGACAATAC CCAGGCGGCGTCGCGCTTCGGGCTGGTTCTGGCTGTGGGCGCCATGCCCACCACGCTGGAGAGGCTGATGCGGGCCTATG GCGCCATCGCCGATGACGGCCGGCTGATGGATCTGGTGTGGTGGCGGGGACAGGATCTCTCGCCGCCCGGTCAGGTGCTG TCGGCGGCGACGGCGCGCCAGATCACCCAGTTCCTATCCGATCCGGCGGCGCGGCTGCCGACCTTTCCCCGGCTGGGCGC CTCCGAGTCCGGCCTTCCCATCGCGGTCAAGACCGGCACCTCCCAGGGCTACCGCGACGCCTGGGCGGTGGCCTGGACCA TGGACACCGTGGTGGGCGTGTGGACCGGCCGGGCGCGAGGCACCACCATGCAGGCCATGACCGGCGCCCAATCCTCGGCC CGGCTGGCTCAGGAGATCCTGGTGGGGCTGCGGGAGAGCAGGGGGGAAAACGTCGCCGAACGGGCCTTCCCGCCACCGGC CAATTACCGTCCGGTGGAATTATGCGCCAGGACCGGCCTGCGCGCGGCGGGACGGTGCTCCCAGACCCTGGTGGAGTGGT TTGCCGATGGCCACCCGCCGGAGGAGGACGATGTCTTCCAACTGCTGAAGGTGGATCTGCGCAATGGTTTGCTGGCGGCG CCGTGGACGCCCCGCGATTACGTGGGCGAGCGCACCTTTGCCGCCTTCCCCCCCGAGCACGCCGCCTGGGGCAGCGCCAA CGCCCTGCCTCCGCCGCCCACCGAGATCAGTCCGCTGGACCGTCCCCAGACCCGCGCCGAGCGGCGGGTCCCGGCCGTCC AGGCGCCCGATGGAACGCTGAAGGTCATCGCTCCCCGTGACGGATTGCGCATGGCCCGCAATCCCGAGACTCCGGCCGAG GCGGACATGCTGAATCTCCGCGCCACCGTCGGGCGGGGCATCGAGACGGTGCTGTGGCTGGTGGACGGCAAGCCCTGGCG CCAGGCCGCCGCCCACCAGCCCGTCCACTGGCCGCTGACCGCCGGAATTCATGTCTTCCAGGTGGCCACCGGCGACGGCG AGCGGATGTCGGCCCCGGTGACCATCTCGGTGGAATAG
Upstream 100 bases:
>100_bases TGCCCGGCCGCTTCATCCAGCCGGCGGCGGTGGCCCGCGCCATGTACGACGACACGGTGAACGGCAACGGCAACGGCGCG CTGGTGGTGGTGACCCGGCC
Downstream 100 bases:
>100_bases TCCTAACTTAGAAGCCGGACCCATGCCGGAAAATGGGAGGGGTGGCGGGCCAGCAGTCCCGGCATGACGTCGTGCCGGCA AAAGCGGCGCAGCAGCAATT
Product: membrane carboxypeptidase/penicillin-binding protein PbpC
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 785; Mature: 784
Protein sequence:
>785_residues MTRGRRAVWAVLAGLVLAVAVLWPRADLTAPAATRILLDRHGAFLAQVGGRDGTLYGYWPVERVPERVAAAIIAIEDRRF GRHGGVDPIALVRAGIERLRGDGRSGASTIAMQVARMQAPGPRTLPRKLLEAATATLMVARHGRDEVLRHYLRLVPFGNG SHGIAHAARWYLDKPVEDLSWAEIAFLSAIPQAPGRMNPFTREGKARAVRRGHRILAHLHESGLMGAGEFALAERQIEHL AIPRHGRRPAEMIHPVLRLQRALAASQAPVPPLVPTTLDLATQRRVHDAASRQMPDWRSRGAEQVAVVVMDRASREVLAW LGSESYFSPQAGAIDFTAVSRSPGSALKPFIYALALDRGRIAANTILADLPETQWGIDNSDHDYLGPMLPRQALANSRNV PAVSVLRQAGLDETHLFLSTLGLHDNTQAASRFGLVLAVGAMPTTLERLMRAYGAIADDGRLMDLVWWRGQDLSPPGQVL SAATARQITQFLSDPAARLPTFPRLGASESGLPIAVKTGTSQGYRDAWAVAWTMDTVVGVWTGRARGTTMQAMTGAQSSA RLAQEILVGLRESRGENVAERAFPPPANYRPVELCARTGLRAAGRCSQTLVEWFADGHPPEEDDVFQLLKVDLRNGLLAA PWTPRDYVGERTFAAFPPEHAAWGSANALPPPPTEISPLDRPQTRAERRVPAVQAPDGTLKVIAPRDGLRMARNPETPAE ADMLNLRATVGRGIETVLWLVDGKPWRQAAAHQPVHWPLTAGIHVFQVATGDGERMSAPVTISVE
Sequences:
>Translated_785_residues MTRGRRAVWAVLAGLVLAVAVLWPRADLTAPAATRILLDRHGAFLAQVGGRDGTLYGYWPVERVPERVAAAIIAIEDRRF GRHGGVDPIALVRAGIERLRGDGRSGASTIAMQVARMQAPGPRTLPRKLLEAATATLMVARHGRDEVLRHYLRLVPFGNG SHGIAHAARWYLDKPVEDLSWAEIAFLSAIPQAPGRMNPFTREGKARAVRRGHRILAHLHESGLMGAGEFALAERQIEHL AIPRHGRRPAEMIHPVLRLQRALAASQAPVPPLVPTTLDLATQRRVHDAASRQMPDWRSRGAEQVAVVVMDRASREVLAW LGSESYFSPQAGAIDFTAVSRSPGSALKPFIYALALDRGRIAANTILADLPETQWGIDNSDHDYLGPMLPRQALANSRNV PAVSVLRQAGLDETHLFLSTLGLHDNTQAASRFGLVLAVGAMPTTLERLMRAYGAIADDGRLMDLVWWRGQDLSPPGQVL SAATARQITQFLSDPAARLPTFPRLGASESGLPIAVKTGTSQGYRDAWAVAWTMDTVVGVWTGRARGTTMQAMTGAQSSA RLAQEILVGLRESRGENVAERAFPPPANYRPVELCARTGLRAAGRCSQTLVEWFADGHPPEEDDVFQLLKVDLRNGLLAA PWTPRDYVGERTFAAFPPEHAAWGSANALPPPPTEISPLDRPQTRAERRVPAVQAPDGTLKVIAPRDGLRMARNPETPAE ADMLNLRATVGRGIETVLWLVDGKPWRQAAAHQPVHWPLTAGIHVFQVATGDGERMSAPVTISVE >Mature_784_residues TRGRRAVWAVLAGLVLAVAVLWPRADLTAPAATRILLDRHGAFLAQVGGRDGTLYGYWPVERVPERVAAAIIAIEDRRFG RHGGVDPIALVRAGIERLRGDGRSGASTIAMQVARMQAPGPRTLPRKLLEAATATLMVARHGRDEVLRHYLRLVPFGNGS HGIAHAARWYLDKPVEDLSWAEIAFLSAIPQAPGRMNPFTREGKARAVRRGHRILAHLHESGLMGAGEFALAERQIEHLA IPRHGRRPAEMIHPVLRLQRALAASQAPVPPLVPTTLDLATQRRVHDAASRQMPDWRSRGAEQVAVVVMDRASREVLAWL GSESYFSPQAGAIDFTAVSRSPGSALKPFIYALALDRGRIAANTILADLPETQWGIDNSDHDYLGPMLPRQALANSRNVP AVSVLRQAGLDETHLFLSTLGLHDNTQAASRFGLVLAVGAMPTTLERLMRAYGAIADDGRLMDLVWWRGQDLSPPGQVLS AATARQITQFLSDPAARLPTFPRLGASESGLPIAVKTGTSQGYRDAWAVAWTMDTVVGVWTGRARGTTMQAMTGAQSSAR LAQEILVGLRESRGENVAERAFPPPANYRPVELCARTGLRAAGRCSQTLVEWFADGHPPEEDDVFQLLKVDLRNGLLAAP WTPRDYVGERTFAAFPPEHAAWGSANALPPPPTEISPLDRPQTRAERRVPAVQAPDGTLKVIAPRDGLRMARNPETPAEA DMLNLRATVGRGIETVLWLVDGKPWRQAAAHQPVHWPLTAGIHVFQVATGDGERMSAPVTISVE
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=779, Percent_Identity=30.4236200256739, Blast_Score=221, Evalue=2e-58, Organism=Escherichia coli, GI1786343, Length=587, Percent_Identity=27.5979557069847, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI87082258, Length=172, Percent_Identity=34.3023255813954, Blast_Score=100, Evalue=7e-22, Organism=Escherichia coli, GI1789601, Length=170, Percent_Identity=31.1764705882353, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 85360; Mature: 85229
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRGRRAVWAVLAGLVLAVAVLWPRADLTAPAATRILLDRHGAFLAQVGGRDGTLYGYWP CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEECC VERVPERVAAAIIAIEDRRFGRHGGVDPIALVRAGIERLRGDGRSGASTIAMQVARMQAP HHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC GPRTLPRKLLEAATATLMVARHGRDEVLRHYLRLVPFGNGSHGIAHAARWYLDKPVEDLS CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC WAEIAFLSAIPQAPGRMNPFTREGKARAVRRGHRILAHLHESGLMGAGEFALAERQIEHL HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AIPRHGRRPAEMIHPVLRLQRALAASQAPVPPLVPTTLDLATQRRVHDAASRQMPDWRSR CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHC GAEQVAVVVMDRASREVLAWLGSESYFSPQAGAIDFTAVSRSPGSALKPFIYALALDRGR CCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC IAANTILADLPETQWGIDNSDHDYLGPMLPRQALANSRNVPAVSVLRQAGLDETHLFLST HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHH LGLHDNTQAASRFGLVLAVGAMPTTLERLMRAYGAIADDGRLMDLVWWRGQDLSPPGQVL HCCCCCHHHHHHHCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHH SAATARQITQFLSDPAARLPTFPRLGASESGLPIAVKTGTSQGYRDAWAVAWTMDTVVGV HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEEEEHHHHHHH WTGRARGTTMQAMTGAQSSARLAQEILVGLRESRGENVAERAFPPPANYRPVELCARTGL CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHCCC RAAGRCSQTLVEWFADGHPPEEDDVFQLLKVDLRNGLLAAPWTPRDYVGERTFAAFPPEH CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCCHHHCCCCCEECCCCCC AAWGSANALPPPPTEISPLDRPQTRAERRVPAVQAPDGTLKVIAPRDGLRMARNPETPAE CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCEEEEECCCCCCCCCCCCCCCH ADMLNLRATVGRGIETVLWLVDGKPWRQAAAHQPVHWPLTAGIHVFQVATGDGERMSAPV HHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCCCHHCCEEEEEEECCCCCCCCCCE TISVE EEEEC >Mature Secondary Structure TRGRRAVWAVLAGLVLAVAVLWPRADLTAPAATRILLDRHGAFLAQVGGRDGTLYGYWP CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEECC VERVPERVAAAIIAIEDRRFGRHGGVDPIALVRAGIERLRGDGRSGASTIAMQVARMQAP HHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC GPRTLPRKLLEAATATLMVARHGRDEVLRHYLRLVPFGNGSHGIAHAARWYLDKPVEDLS CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC WAEIAFLSAIPQAPGRMNPFTREGKARAVRRGHRILAHLHESGLMGAGEFALAERQIEHL HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AIPRHGRRPAEMIHPVLRLQRALAASQAPVPPLVPTTLDLATQRRVHDAASRQMPDWRSR CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHC GAEQVAVVVMDRASREVLAWLGSESYFSPQAGAIDFTAVSRSPGSALKPFIYALALDRGR CCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC IAANTILADLPETQWGIDNSDHDYLGPMLPRQALANSRNVPAVSVLRQAGLDETHLFLST HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHH LGLHDNTQAASRFGLVLAVGAMPTTLERLMRAYGAIADDGRLMDLVWWRGQDLSPPGQVL HCCCCCHHHHHHHCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHH SAATARQITQFLSDPAARLPTFPRLGASESGLPIAVKTGTSQGYRDAWAVAWTMDTVVGV HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEEEEHHHHHHH WTGRARGTTMQAMTGAQSSARLAQEILVGLRESRGENVAERAFPPPANYRPVELCARTGL CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHCCC RAAGRCSQTLVEWFADGHPPEEDDVFQLLKVDLRNGLLAAPWTPRDYVGERTFAAFPPEH CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCCHHHCCCCCEECCCCCC AAWGSANALPPPPTEISPLDRPQTRAERRVPAVQAPDGTLKVIAPRDGLRMARNPETPAE CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCCCEEEEECCCCCCCCCCCCCCCH ADMLNLRATVGRGIETVLWLVDGKPWRQAAAHQPVHWPLTAGIHVFQVATGDGERMSAPV HHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCCCHHCCEEEEEEECCCCCCCCCCE TISVE EEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]