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The map label for this gene is aphA [H]

Identifier: 83312027

GI number: 83312027

Start: 3121239

End: 3123053

Strand: Reverse

Name: aphA [H]

Synonym: amb2928

Alternate gene names: 83312027

Gene position: 3123053-3121239 (Counterclockwise)

Preceding gene: 83312028

Following gene: 83312026

Centisome position: 62.87

GC content: 64.68

Gene sequence:

>1815_bases
GTGACCAGCCCACGCCTGAAGCTGTTGCCCTGGCTGGTGCTGCTCGCCTCGTTAGGTGTGACGTGGCTCGCCTGGGATCA
CGAGCGCGATACCGCCCAGGAACAGTTGCGGCGGCAATTCGATTTCGCCTTGAGGGATATGGCCGGCCGGATCGAGCAGC
GGGTCATGACCTATGAGCAGATGCTGCGCGGCGTCCAGGGGATGTTCTCCATCGTCGGCATTTCCGAGCGTGATATGCTG
GCCTCCTACGTGGACGCACTTCAGCCGGATGCCAACTTCTCCGGTATCCAGGCCATCGGCATCGTGGAGAGCGTGGCGGC
AGACCGCCTGGACGAGCATCTGGGCGCCATGCGCCGGCTCGGCTTCGTGGATTACGAGATCCAGCCGGATGGCCGGCGCG
AAGCCTATGCCCCCATCGTTCAGCGCGAACCCAATATCGGCGTCAACCGCAGCCGTCTCGGATTCGACACCTGGTCCGAC
CCGGTGCGGCGCGAGGCCATGGAGAAGGCCCGCGATTCCGGCATGCCGGTAATCTCCGGCAAGGTGCAGCTTTCCGTCGA
TTCGGGGGCGGGGGCTCCGCCCGGATTCATCATGTACATGCCGGTCTTCGGCAAAGGCCTGCCGCGCCAGAATGTGGCGC
AGCGCCGGGCCAGCCTGGCCGGATGGGTCTTCGTATCCTTCCGGGTCAAGGATGTCATGGCCAGCCTCTACGGCGAACTG
CCCCAGGGATTGGCCTTCACCATCTATGACGGGGTGACTCTGGCCGACCGGGACGTCTTGTACAAATCGCCGGAAGACGC
CGGCGCCGCGACGGTTTTCGCCAGCAACGAATATCTGGTGGTGGGCGGTCACACATGGACGCTTGCGGCGAAGATGCGCC
AAGCGTTCGAGGGTGGGCCGGGGCGCGACACGGCGACCGTCGTCGCCGTTGCAGGCATCGGGCTGAGCCTGCTGCTGTCC
TCCCTGGTCTGGCTGATGGCCACGGGGCGGGAGCGGGCGCTGCAACTGGCGCAAACCATGACCCGGGACCTGCGGGCGGC
CAAGGAGGCGGCCGAGGACGCGCAGCGTTCGCTGGCCGCCCAGGCTCACAATCTGGCCCAGTCCAATGCCGACCTTGAAC
AATTCGCCTATGTGGCGTCGCACGACCTGCGCACGCCGCTGCGCAATATCGTCAGCTACGCCCAGCTTCTCGAACGCCGC
TACAAGGGGCATCTGGGCGCCGACGCCAATGATTTCATCGACTTCATCGTCGAGAATTCCAAGAAGATGACCTTGCTGAT
CTCCGATCTGCTGGAATATTCCAGGGTCTCGCGTCAGGCCGCCCCGCTGGAGCCGGTTTCGGTGGCCCGTGCGCTCCATC
TGGCCATGGGCAATCTTCGCCCCGACCTGGAAGGCTGCGGGGCGGAAATCCGCATCGGCGCCCTGCCGGAGGTCCTGGCG
GTGGAGACCTATCTGGTCAGCCTGTTTCAGAATCTGATCGGCAACGCCGTCAAGTACCGGAGCCGGGAGCGGCCGCTGCA
GATCGCCATCGCGGCCGAGCGGACTGGCTCCGATCTGTGGCGGTTCAGCCTGGCCGACAACGGAATCGGCATCGAGCCCG
CCTATCACGACAAGATCTTCGAGATCTTTCAGCGGCTGGACCCGTCCGGCGACGCCGAAGGTACCGGCATCGGCCTTACC
CTGTGCCGGCGCATCGTCCATCGCTTTGGCGGGACCATCTGGCTGGAGTCCGAAATGGGACGGGGAAGCACGTTCTTTTT
CACCTTGAGAGCCGTTTCGACGCCCCGAGCGTCTTTTTCGTCGACGACAACCTGA

Upstream 100 bases:

>100_bases
TGGTCAGGGAGATGCGCAGGGATGGAACCGTGCGCCGGATCTTCCAGAAATATTTCCCCCCAGACCTGGCTGCGGCCATG
ACTGAATTCGACGATTCGCC

Downstream 100 bases:

>100_bases
CCGGCCGCCCGGCCAGGGGCGAATATGAATCTTGGACCATTGTGCGTTACCTTTGACGCCCGATGACCTGGAAGGAAAAG
GATCGGAAGGAATGGATGCG

Product: bacteriophytochrome

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MTSPRLKLLPWLVLLASLGVTWLAWDHERDTAQEQLRRQFDFALRDMAGRIEQRVMTYEQMLRGVQGMFSIVGISERDML
ASYVDALQPDANFSGIQAIGIVESVAADRLDEHLGAMRRLGFVDYEIQPDGRREAYAPIVQREPNIGVNRSRLGFDTWSD
PVRREAMEKARDSGMPVISGKVQLSVDSGAGAPPGFIMYMPVFGKGLPRQNVAQRRASLAGWVFVSFRVKDVMASLYGEL
PQGLAFTIYDGVTLADRDVLYKSPEDAGAATVFASNEYLVVGGHTWTLAAKMRQAFEGGPGRDTATVVAVAGIGLSLLLS
SLVWLMATGRERALQLAQTMTRDLRAAKEAAEDAQRSLAAQAHNLAQSNADLEQFAYVASHDLRTPLRNIVSYAQLLERR
YKGHLGADANDFIDFIVENSKKMTLLISDLLEYSRVSRQAAPLEPVSVARALHLAMGNLRPDLEGCGAEIRIGALPEVLA
VETYLVSLFQNLIGNAVKYRSRERPLQIAIAAERTGSDLWRFSLADNGIGIEPAYHDKIFEIFQRLDPSGDAEGTGIGLT
LCRRIVHRFGGTIWLESEMGRGSTFFFTLRAVSTPRASFSSTTT

Sequences:

>Translated_604_residues
MTSPRLKLLPWLVLLASLGVTWLAWDHERDTAQEQLRRQFDFALRDMAGRIEQRVMTYEQMLRGVQGMFSIVGISERDML
ASYVDALQPDANFSGIQAIGIVESVAADRLDEHLGAMRRLGFVDYEIQPDGRREAYAPIVQREPNIGVNRSRLGFDTWSD
PVRREAMEKARDSGMPVISGKVQLSVDSGAGAPPGFIMYMPVFGKGLPRQNVAQRRASLAGWVFVSFRVKDVMASLYGEL
PQGLAFTIYDGVTLADRDVLYKSPEDAGAATVFASNEYLVVGGHTWTLAAKMRQAFEGGPGRDTATVVAVAGIGLSLLLS
SLVWLMATGRERALQLAQTMTRDLRAAKEAAEDAQRSLAAQAHNLAQSNADLEQFAYVASHDLRTPLRNIVSYAQLLERR
YKGHLGADANDFIDFIVENSKKMTLLISDLLEYSRVSRQAAPLEPVSVARALHLAMGNLRPDLEGCGAEIRIGALPEVLA
VETYLVSLFQNLIGNAVKYRSRERPLQIAIAAERTGSDLWRFSLADNGIGIEPAYHDKIFEIFQRLDPSGDAEGTGIGLT
LCRRIVHRFGGTIWLESEMGRGSTFFFTLRAVSTPRASFSSTTT
>Mature_603_residues
TSPRLKLLPWLVLLASLGVTWLAWDHERDTAQEQLRRQFDFALRDMAGRIEQRVMTYEQMLRGVQGMFSIVGISERDMLA
SYVDALQPDANFSGIQAIGIVESVAADRLDEHLGAMRRLGFVDYEIQPDGRREAYAPIVQREPNIGVNRSRLGFDTWSDP
VRREAMEKARDSGMPVISGKVQLSVDSGAGAPPGFIMYMPVFGKGLPRQNVAQRRASLAGWVFVSFRVKDVMASLYGELP
QGLAFTIYDGVTLADRDVLYKSPEDAGAATVFASNEYLVVGGHTWTLAAKMRQAFEGGPGRDTATVVAVAGIGLSLLLSS
LVWLMATGRERALQLAQTMTRDLRAAKEAAEDAQRSLAAQAHNLAQSNADLEQFAYVASHDLRTPLRNIVSYAQLLERRY
KGHLGADANDFIDFIVENSKKMTLLISDLLEYSRVSRQAAPLEPVSVARALHLAMGNLRPDLEGCGAEIRIGALPEVLAV
ETYLVSLFQNLIGNAVKYRSRERPLQIAIAAERTGSDLWRFSLADNGIGIEPAYHDKIFEIFQRLDPSGDAEGTGIGLTL
CRRIVHRFGGTIWLESEMGRGSTFFFTLRAVSTPRASFSSTTT

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=239, Percent_Identity=30.1255230125523, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1789149, Length=299, Percent_Identity=25.752508361204, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=27.6018099547511, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1786912, Length=222, Percent_Identity=30.6306306306306, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081816, Length=237, Percent_Identity=28.6919831223629, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI145693157, Length=248, Percent_Identity=23.3870967741935, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786600, Length=240, Percent_Identity=27.9166666666667, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788549, Length=287, Percent_Identity=26.8292682926829, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 66610; Mature: 66479

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50839 CHASE ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPRLKLLPWLVLLASLGVTWLAWDHERDTAQEQLRRQFDFALRDMAGRIEQRVMTYEQ
CCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLRGVQGMFSIVGISERDMLASYVDALQPDANFSGIQAIGIVESVAADRLDEHLGAMRRL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GFVDYEIQPDGRREAYAPIVQREPNIGVNRSRLGFDTWSDPVRREAMEKARDSGMPVISG
CCEEEEECCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEC
KVQLSVDSGAGAPPGFIMYMPVFGKGLPRQNVAQRRASLAGWVFVSFRVKDVMASLYGEL
EEEEEECCCCCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCC
PQGLAFTIYDGVTLADRDVLYKSPEDAGAATVFASNEYLVVGGHTWTLAAKMRQAFEGGP
CCCCEEEEECCEEEECCCHHCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHCCCC
GRDTATVVAVAGIGLSLLLSSLVWLMATGRERALQLAQTMTRDLRAAKEAAEDAQRSLAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAHNLAQSNADLEQFAYVASHDLRTPLRNIVSYAQLLERRYKGHLGADANDFIDFIVENS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
KKMTLLISDLLEYSRVSRQAAPLEPVSVARALHLAMGNLRPDLEGCGAEIRIGALPEVLA
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCHHHH
VETYLVSLFQNLIGNAVKYRSRERPLQIAIAAERTGSDLWRFSLADNGIGIEPAYHDKIF
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHH
EIFQRLDPSGDAEGTGIGLTLCRRIVHRFGGTIWLESEMGRGSTFFFTLRAVSTPRASFS
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCCCC
STTT
CCCC
>Mature Secondary Structure 
TSPRLKLLPWLVLLASLGVTWLAWDHERDTAQEQLRRQFDFALRDMAGRIEQRVMTYEQ
CCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLRGVQGMFSIVGISERDMLASYVDALQPDANFSGIQAIGIVESVAADRLDEHLGAMRRL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GFVDYEIQPDGRREAYAPIVQREPNIGVNRSRLGFDTWSDPVRREAMEKARDSGMPVISG
CCEEEEECCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEC
KVQLSVDSGAGAPPGFIMYMPVFGKGLPRQNVAQRRASLAGWVFVSFRVKDVMASLYGEL
EEEEEECCCCCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCC
PQGLAFTIYDGVTLADRDVLYKSPEDAGAATVFASNEYLVVGGHTWTLAAKMRQAFEGGP
CCCCEEEEECCEEEECCCHHCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHCCCC
GRDTATVVAVAGIGLSLLLSSLVWLMATGRERALQLAQTMTRDLRAAKEAAEDAQRSLAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAHNLAQSNADLEQFAYVASHDLRTPLRNIVSYAQLLERRYKGHLGADANDFIDFIVENS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
KKMTLLISDLLEYSRVSRQAAPLEPVSVARALHLAMGNLRPDLEGCGAEIRIGALPEVLA
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCHHHH
VETYLVSLFQNLIGNAVKYRSRERPLQIAIAAERTGSDLWRFSLADNGIGIEPAYHDKIF
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHH
EIFQRLDPSGDAEGTGIGLTLCRRIVHRFGGTIWLESEMGRGSTFFFTLRAVSTPRASFS
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCCCC
STTT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]