| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
Click here to switch to the map view.
The map label for this gene is aphA [H]
Identifier: 83311803
GI number: 83311803
Start: 2896836
End: 2898143
Strand: Reverse
Name: aphA [H]
Synonym: amb2704
Alternate gene names: 83311803
Gene position: 2898143-2896836 (Counterclockwise)
Preceding gene: 83311804
Following gene: 83311801
Centisome position: 58.35
GC content: 68.65
Gene sequence:
>1308_bases ATGCAGAGCATCCAGGCGGGGAAGGCGGTCGTCCAGTCGGTTGCCCGGGTCCGGCGGATGTTCACGCTGGGACTTGCCGG GGTGGCGTTCCTGTGGCTGTTCGTCATTCCCGCCGCCGAGGTCTGGCAGCGCCACAACGAGGCCCGGCTGGAAGCGGAAA TCAGGCTCGGCCTGGTGGCCGACCGCATCTCGTCCTTCGTGGCCGCCAACCTGGATATCTGGGAGTTCGAGGGGGTACGC CTGCCCTCGGTGGTGGCCGGGGTCATGCGTGGCGGGACCAACCCCCCGTCGCGCCTGGCGTTCATCAATGCCATGGGCGA GGTCAACGAGTTTCCGGTGCAGGGAGTGGTCGGGCGCTTCAACCTCGAGATCGAGGACGTGGTCACCGATGGCCGGCGGC CGGTGGGGCGGGTGGTAATGACCGTGCCCCTGGACGAGGCCCTGCGGCCGGCCCTGCTGTCCGGCTCGCTGGGGCTGGGG TCCATGGCGCTGCTGCTGCTGCTGGTCCGCATGGTGGGCCGCAAGGCCCTGGACCAGTCGCTTTCCGTCATCGAGGACAC CACGGACAGCCTGGGGCGGCGCATTCGGGAACTGGAGGAGACCCGGCAATTGCTGGCGGCCCAGTCGGTCCACCTGACCA TGGCCACCCAGGACATCACCCACGTGGCCCAGTTGACGACTCACCACCTGCGCGAGCCGCTGCGGACCGTCCTGTCCTAT TCCCAGTTGCTGGTGCGCTGGCACGAGGCCGGGGGCAAGGGGGACGAGGCCGGGGGCTATGTGGACTTTCTCAAGTCCGG CGTGATCCGCATGCAGACGCAGTTGAAGGCCTTGTCCGCCTATCTTGGCCTGCGCGAGCGCAGCATGTCGCCCACGCCCG TGGCGCTGGAGGATGCGGTCAAGGTGGCGGTGCGGCGCCTGGACTCGGCGGTGGTGGTGGAGTGGGGCGACCTGCCCATT TTGACCGCCGATGCCGAAATGCTGGCCGACCTGGTGGCTGATCTGCTGGCTCACATGGCCCGGCACGGCCGACCCGGCTG CACGCCAAAGGTCCATATCCAGGCTTTTGCCCTGAGCGGCGACTGGGAGATTCGTCTGGCCGACGACGGCCTGCCCCTGG CCGAGCGTGACCGGGACCGCATGTTCCAGCTTCTGGTCCATGGCGACGGGGGCGAGATGCGTCCCGGCCTTGCCGCCGCC CGCCTGATGGCCTTTCTGCTGGGGGGCGCCCTGTGGGTCGAGGATGGAGCCGGGGACGGCGTCGTCCTGTGCTTCACCTT GCCCCGGCATCCCCCCATTCGAATCTAG
Upstream 100 bases:
>100_bases GGCCTCGGCCGAGGCGCGGGCGTTCGTGGATTTTGCCCGCTCGCCCGCCGCCGCAACGCTGCTGCGCGCCAATGGCTGCC TGCCGGGGGGATCTCCCTAG
Downstream 100 bases:
>100_bases ATCAAGCCGCTGGGGCCTTGTTGCGCCGGCGTCGGGTCTACGAAGGCATGGAGGGGGCGGGTGCCGCTTCGGTGGAGGGA GGCGACTCGTCTTCCGGCGG
Product: Signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MQSIQAGKAVVQSVARVRRMFTLGLAGVAFLWLFVIPAAEVWQRHNEARLEAEIRLGLVADRISSFVAANLDIWEFEGVR LPSVVAGVMRGGTNPPSRLAFINAMGEVNEFPVQGVVGRFNLEIEDVVTDGRRPVGRVVMTVPLDEALRPALLSGSLGLG SMALLLLLVRMVGRKALDQSLSVIEDTTDSLGRRIRELEETRQLLAAQSVHLTMATQDITHVAQLTTHHLREPLRTVLSY SQLLVRWHEAGGKGDEAGGYVDFLKSGVIRMQTQLKALSAYLGLRERSMSPTPVALEDAVKVAVRRLDSAVVVEWGDLPI LTADAEMLADLVADLLAHMARHGRPGCTPKVHIQAFALSGDWEIRLADDGLPLAERDRDRMFQLLVHGDGGEMRPGLAAA RLMAFLLGGALWVEDGAGDGVVLCFTLPRHPPIRI
Sequences:
>Translated_435_residues MQSIQAGKAVVQSVARVRRMFTLGLAGVAFLWLFVIPAAEVWQRHNEARLEAEIRLGLVADRISSFVAANLDIWEFEGVR LPSVVAGVMRGGTNPPSRLAFINAMGEVNEFPVQGVVGRFNLEIEDVVTDGRRPVGRVVMTVPLDEALRPALLSGSLGLG SMALLLLLVRMVGRKALDQSLSVIEDTTDSLGRRIRELEETRQLLAAQSVHLTMATQDITHVAQLTTHHLREPLRTVLSY SQLLVRWHEAGGKGDEAGGYVDFLKSGVIRMQTQLKALSAYLGLRERSMSPTPVALEDAVKVAVRRLDSAVVVEWGDLPI LTADAEMLADLVADLLAHMARHGRPGCTPKVHIQAFALSGDWEIRLADDGLPLAERDRDRMFQLLVHGDGGEMRPGLAAA RLMAFLLGGALWVEDGAGDGVVLCFTLPRHPPIRI >Mature_435_residues MQSIQAGKAVVQSVARVRRMFTLGLAGVAFLWLFVIPAAEVWQRHNEARLEAEIRLGLVADRISSFVAANLDIWEFEGVR LPSVVAGVMRGGTNPPSRLAFINAMGEVNEFPVQGVVGRFNLEIEDVVTDGRRPVGRVVMTVPLDEALRPALLSGSLGLG SMALLLLLVRMVGRKALDQSLSVIEDTTDSLGRRIRELEETRQLLAAQSVHLTMATQDITHVAQLTTHHLREPLRTVLSY SQLLVRWHEAGGKGDEAGGYVDFLKSGVIRMQTQLKALSAYLGLRERSMSPTPVALEDAVKVAVRRLDSAVVVEWGDLPI LTADAEMLADLVADLLAHMARHGRPGCTPKVHIQAFALSGDWEIRLADDGLPLAERDRDRMFQLLVHGDGGEMRPGLAAA RLMAFLLGGALWVEDGAGDGVVLCFTLPRHPPIRI
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 47471; Mature: 47471
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSIQAGKAVVQSVARVRRMFTLGLAGVAFLWLFVIPAAEVWQRHNEARLEAEIRLGLVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHH DRISSFVAANLDIWEFEGVRLPSVVAGVMRGGTNPPSRLAFINAMGEVNEFPVQGVVGRF HHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEE NLEIEDVVTDGRRPVGRVVMTVPLDEALRPALLSGSLGLGSMALLLLLVRMVGRKALDQS CCCHHHHHCCCCCCCCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LSVIEDTTDSLGRRIRELEETRQLLAAQSVHLTMATQDITHVAQLTTHHLREPLRTVLSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH SQLLVRWHEAGGKGDEAGGYVDFLKSGVIRMQTQLKALSAYLGLRERSMSPTPVALEDAV HHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH KVAVRRLDSAVVVEWGDLPILTADAEMLADLVADLLAHMARHGRPGCTPKVHIQAFALSG HHHHHHCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC DWEIRLADDGLPLAERDRDRMFQLLVHGDGGEMRPGLAAARLMAFLLGGALWVEDGAGDG CEEEEECCCCCCCHHCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCC VVLCFTLPRHPPIRI EEEEEECCCCCCCCC >Mature Secondary Structure MQSIQAGKAVVQSVARVRRMFTLGLAGVAFLWLFVIPAAEVWQRHNEARLEAEIRLGLVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHH DRISSFVAANLDIWEFEGVRLPSVVAGVMRGGTNPPSRLAFINAMGEVNEFPVQGVVGRF HHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEE NLEIEDVVTDGRRPVGRVVMTVPLDEALRPALLSGSLGLGSMALLLLLVRMVGRKALDQS CCCHHHHHCCCCCCCCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LSVIEDTTDSLGRRIRELEETRQLLAAQSVHLTMATQDITHVAQLTTHHLREPLRTVLSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH SQLLVRWHEAGGKGDEAGGYVDFLKSGVIRMQTQLKALSAYLGLRERSMSPTPVALEDAV HHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH KVAVRRLDSAVVVEWGDLPILTADAEMLADLVADLLAHMARHGRPGCTPKVHIQAFALSG HHHHHHCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC DWEIRLADDGLPLAERDRDRMFQLLVHGDGGEMRPGLAAARLMAFLLGGALWVEDGAGDG CEEEEECCCCCCCHHCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCC VVLCFTLPRHPPIRI EEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]