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The map label for this gene is cbbM [H]

Identifier: 83311795

GI number: 83311795

Start: 2888438

End: 2889817

Strand: Reverse

Name: cbbM [H]

Synonym: amb2696

Alternate gene names: 83311795

Gene position: 2889817-2888438 (Counterclockwise)

Preceding gene: 83311796

Following gene: 83311794

Centisome position: 58.18

GC content: 66.16

Gene sequence:

>1380_bases
ATGGACCAGTCGAAGCGCTACGTGAATTTGGGACTCCGCGAGGCCGACCTGATCAAGGGCGGCCGGCATGTGCTGTGCGC
CTACCGCATGCGGCCCAGGCCCGGCCACGGCTATGTGGAGACGGCGGCCCATTTCGCCGCTGAATCCTCCACCGGCACCA
ATGTGGAGGTGTGCACCACCGACGACTTCACCCGCGGCGTCGACGCCCTGGTCTACGAGGTCGACGAGGCGGAAGGGCTG
ATGAAGATCGCCTATCCGGTGGAGCTGTTCGACCGCAACATCATTGACGGCAAGGCGATGATCGCCTCGTTCCTGACGCT
GACCGTGGGCAACAACCAGGGCATGAGCGACGTGGAAAACGCGAAGATGGAGGATTTTTACGTCCCGCCGGACTTCCTGA
CGCTGTTCGACGGCCCGGCCCGCAATATCGCCCATATGTGGAAGGTGCTGGGGCGGCCCGAGGTGAACGGCGGCATGGTG
GTGGGCACCATCATCAAGCCCAAGCTGGGATTGCGGCCCAAGCCCTTCGCCGATGCCTGCCACCAGTTCTGGCTGGGCGG
CGATTTCATCAAGAACGACGAGCCCCAGGGCAACCAGGTCTTCGCGCCGTTCAAGGACACCATGCGGCTGGTGGCCGATT
CCATGCGCCGCGCCCAGGACGAGACGGGGCAGGCCAAGCTGTTCTCCGCCAACATCACCGCCGACGATCCGGCCGAGATG
ATCGCCCGCGGCCAGTTCATCCTGGACACCTTCGGCGAGAACGCTTCCCACGTGGCCTTCCTGGTGGACGGCTTCGTGGC
CGGGCCGACGGCGGTCACCACCTGCCGGCGGAACTTCCCCGACACCTTCCTGCACTATCACCGGGCGGGGCACGGCGCCA
TCACGTCGCGCCAGTCCAAGCGCGGCTATTCCGTGCTGGTCCACATGAAGATGGCCCGCCTGCTCGGCGCCAGCGGCATC
CATACCGGCACCATGGGCTACGGCAAGATGGAGGGCGCCCCCGACGAGAAGGTGGTGGCCTACATGCTGGAGCGCCCGAC
GGCCGAAGGTCCCCATTATCGCCAGGATTGGGGCGACATGCGGGCCTGCACGCCCATCATCTCGGGCGGCATGAACGCGC
TGCGCCTGCCGGGCTTCTTCGACAATCTGGGCCATTCCAACGTGATCCAGACCTCGGGCGGCGGCGCCTTCGGCCACAAG
GACGGACCGGTCGCCGGGGCGCTGTCGCTGCGTCAGGCCCACGAGGCATGGATGCGGGGAATTTCCCTGGTGGAGTATGC
CCAGGGGCATCCCGAACTCAGGGGGGCGTTTGAATCCTTTGCGTCCGACGCCGATCGGCTGTATCCCGGCTGGCGCGATC
GCCTGCGCATCGCGGCTTGA

Upstream 100 bases:

>100_bases
CCCCCTCCGGGTGTTCCGCCGGCCGGGGGGCATGGCCATAGTAGCGTCCACGAATACAAGGGCGAAGGCCCGGACTTGAC
AGCAGGGAGACGTTGGGACC

Downstream 100 bases:

>100_bases
GGGGAACGCCACATGTCGAGGAAACATCCGGTCATCGCCGTCACCGGCTCATCGGGGGCGGGGACCAGCACGGTCAAGGA
CTCCTTCGAACACATGTTTC

Product: ribulose bisphosphate carboxylase

Products: NA

Alternate protein names: RuBisCO [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MDQSKRYVNLGLREADLIKGGRHVLCAYRMRPRPGHGYVETAAHFAAESSTGTNVEVCTTDDFTRGVDALVYEVDEAEGL
MKIAYPVELFDRNIIDGKAMIASFLTLTVGNNQGMSDVENAKMEDFYVPPDFLTLFDGPARNIAHMWKVLGRPEVNGGMV
VGTIIKPKLGLRPKPFADACHQFWLGGDFIKNDEPQGNQVFAPFKDTMRLVADSMRRAQDETGQAKLFSANITADDPAEM
IARGQFILDTFGENASHVAFLVDGFVAGPTAVTTCRRNFPDTFLHYHRAGHGAITSRQSKRGYSVLVHMKMARLLGASGI
HTGTMGYGKMEGAPDEKVVAYMLERPTAEGPHYRQDWGDMRACTPIISGGMNALRLPGFFDNLGHSNVIQTSGGGAFGHK
DGPVAGALSLRQAHEAWMRGISLVEYAQGHPELRGAFESFASDADRLYPGWRDRLRIAA

Sequences:

>Translated_459_residues
MDQSKRYVNLGLREADLIKGGRHVLCAYRMRPRPGHGYVETAAHFAAESSTGTNVEVCTTDDFTRGVDALVYEVDEAEGL
MKIAYPVELFDRNIIDGKAMIASFLTLTVGNNQGMSDVENAKMEDFYVPPDFLTLFDGPARNIAHMWKVLGRPEVNGGMV
VGTIIKPKLGLRPKPFADACHQFWLGGDFIKNDEPQGNQVFAPFKDTMRLVADSMRRAQDETGQAKLFSANITADDPAEM
IARGQFILDTFGENASHVAFLVDGFVAGPTAVTTCRRNFPDTFLHYHRAGHGAITSRQSKRGYSVLVHMKMARLLGASGI
HTGTMGYGKMEGAPDEKVVAYMLERPTAEGPHYRQDWGDMRACTPIISGGMNALRLPGFFDNLGHSNVIQTSGGGAFGHK
DGPVAGALSLRQAHEAWMRGISLVEYAQGHPELRGAFESFASDADRLYPGWRDRLRIAA
>Mature_459_residues
MDQSKRYVNLGLREADLIKGGRHVLCAYRMRPRPGHGYVETAAHFAAESSTGTNVEVCTTDDFTRGVDALVYEVDEAEGL
MKIAYPVELFDRNIIDGKAMIASFLTLTVGNNQGMSDVENAKMEDFYVPPDFLTLFDGPARNIAHMWKVLGRPEVNGGMV
VGTIIKPKLGLRPKPFADACHQFWLGGDFIKNDEPQGNQVFAPFKDTMRLVADSMRRAQDETGQAKLFSANITADDPAEM
IARGQFILDTFGENASHVAFLVDGFVAGPTAVTTCRRNFPDTFLHYHRAGHGAITSRQSKRGYSVLVHMKMARLLGASGI
HTGTMGYGKMEGAPDEKVVAYMLERPTAEGPHYRQDWGDMRACTPIISGGMNALRLPGFFDNLGHSNVIQTSGGGAFGHK
DGPVAGALSLRQAHEAWMRGISLVEYAQGHPELRGAFESFASDADRLYPGWRDRLRIAA

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type II subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020871
- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 50350; Mature: 50350

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSKRYVNLGLREADLIKGGRHVLCAYRMRPRPGHGYVETAAHFAAESSTGTNVEVCTT
CCCCCCEEECCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
DDFTRGVDALVYEVDEAEGLMKIAYPVELFDRNIIDGKAMIASFLTLTVGNNQGMSDVEN
CCHHHCHHHHEEEEHHHCCEEEEECHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCHHHC
AKMEDFYVPPDFLTLFDGPARNIAHMWKVLGRPEVNGGMVVGTIIKPKLGLRPKPFADAC
CCCCCEECCCCHHEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHH
HQFWLGGDFIKNDEPQGNQVFAPFKDTMRLVADSMRRAQDETGQAKLFSANITADDPAEM
HHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
IARGQFILDTFGENASHVAFLVDGFVAGPTAVTTCRRNFPDTFLHYHRAGHGAITSRQSK
HHCCCCEEECCCCCCCEEEEEECCHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
RGYSVLVHMKMARLLGASGIHTGTMGYGKMEGAPDEKVVAYMLERPTAEGPHYRQDWGDM
CCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
RACTPIISGGMNALRLPGFFDNLGHSNVIQTSGGGAFGHKDGPVAGALSLRQAHEAWMRG
HHHHHHHHCCCCEEECCCHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ISLVEYAQGHPELRGAFESFASDADRLYPGWRDRLRIAA
HHHHHHHCCCHHHHHHHHHHHCCHHHCCCCHHHCEEECC
>Mature Secondary Structure
MDQSKRYVNLGLREADLIKGGRHVLCAYRMRPRPGHGYVETAAHFAAESSTGTNVEVCTT
CCCCCCEEECCCCHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
DDFTRGVDALVYEVDEAEGLMKIAYPVELFDRNIIDGKAMIASFLTLTVGNNQGMSDVEN
CCHHHCHHHHEEEEHHHCCEEEEECHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCHHHC
AKMEDFYVPPDFLTLFDGPARNIAHMWKVLGRPEVNGGMVVGTIIKPKLGLRPKPFADAC
CCCCCEECCCCHHEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHH
HQFWLGGDFIKNDEPQGNQVFAPFKDTMRLVADSMRRAQDETGQAKLFSANITADDPAEM
HHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
IARGQFILDTFGENASHVAFLVDGFVAGPTAVTTCRRNFPDTFLHYHRAGHGAITSRQSK
HHCCCCEEECCCCCCCEEEEEECCHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
RGYSVLVHMKMARLLGASGIHTGTMGYGKMEGAPDEKVVAYMLERPTAEGPHYRQDWGDM
CCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
RACTPIISGGMNALRLPGFFDNLGHSNVIQTSGGGAFGHKDGPVAGALSLRQAHEAWMRG
HHHHHHHHCCCCEEECCCHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ISLVEYAQGHPELRGAFESFASDADRLYPGWRDRLRIAA
HHHHHHHCCCHHHHHHHHHHHCCHHHCCCCHHHCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA