BacMap

Definition	Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession	NC_007626
Length	4,967,148

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The map label for this gene is hbdH1 [H]

Identifier: 83311776

GI number: 83311776

Start: 2867781

End: 2868563

Strand: Reverse

Name: hbdH1 [H]

Synonym: amb2677

Alternate gene names: 83311776

Gene position: 2868563-2867781 (Counterclockwise)

Preceding gene: 83311777

Following gene: 83311775

Centisome position: 57.75

GC content: 66.54

Gene sequence:

>783_bases
ATGTTGAACGGCAAACGGGCTCTGGTGACCGGGTCCACCAGCGGTATCGGTCTCGGCATCGCCCGCGCCCTGGCGGCGCA
GGGGGCTTCGGTCATGCTCAACGGTTTCGGTGACGGGGCCGAGATCGAGGCGCTGCGCGCCGGGCTGGCCAAGGAATTCG
GCGTCACCGTGCTTTACAACGGGGCCGATCTGTCCAAGCCCGATGGCGCCGGCGTTCTGGTGCGCGATGCCGAAGCCCGG
CTGGGCGGCGTCGATATCCTGGTCAACAATGCCGGTATCCAGCATGTCTCTCCCGTGGAGGAGTTTCCGCTGGAGCGCTG
GGACGCGGTCATCGCCATCAACCTCACTTCGGTGTTCCAGGCCATCCGCGCCGCGCTGCCCGGCATGAAGGCGCGAGGCT
GGGGCCGCATCATCAACGTGGCCTCGGCCCATGGCCTGGTGGCCTCGGTCAACAAATCCGCCTATGTGGCTTCCAAGCAC
GGCGTGCTGGGGCTGACCAAGGTGGTGGGGCTGGAAACCGCCGAGACCGACGTGACCTGCAACGCCATCTGCCCCGGCTG
GGTGCTCACCCCCCTGGTGCAAAAGCAGATCGATGCCCGCGCCGAGGCGCAAGGCGTCCCGGTGGAGCAGGCCGGGCGTG
ACCTGCTGTCGGAAAAGCAGCCTTCAAAGAAATTCACCACGCCGGAGCAGATCGGCGATCTGGCGGTGTTCCTGTGCTCT
GGCGCCGGTGCCAACATGACCGGTACCAGCCTGACCATGGATGGCGGCTGGACGGCGCAATGA

Upstream 100 bases:

>100_bases
CAGGCGGTCAAGGCCGGAGCCGAGGCGTTCTTCAAGCGGTAAATCGGTACTTGTTTGCCGCTTTGTGGCTTGGTATCACC
AAGGGAGTGGAGGGAACGGC

Downstream 100 bases:

>100_bases
GTCATAAGAAGGAGCCGTCGCGCCAGGCTGATTATCCCTACCGCCTGGAGATCCAGACCCGGTGGTCGGACAACGACATG
TTCGGCCACCTGAACAATGT

Product: dehydrogenase

Products: NA

Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLNGKRALVTGSTSGIGLGIARALAAQGASVMLNGFGDGAEIEALRAGLAKEFGVTVLYNGADLSKPDGAGVLVRDAEAR
LGGVDILVNNAGIQHVSPVEEFPLERWDAVIAINLTSVFQAIRAALPGMKARGWGRIINVASAHGLVASVNKSAYVASKH
GVLGLTKVVGLETAETDVTCNAICPGWVLTPLVQKQIDARAEAQGVPVEQAGRDLLSEKQPSKKFTTPEQIGDLAVFLCS
GAGANMTGTSLTMDGGWTAQ

Sequences:

>Translated_260_residues
MLNGKRALVTGSTSGIGLGIARALAAQGASVMLNGFGDGAEIEALRAGLAKEFGVTVLYNGADLSKPDGAGVLVRDAEAR
LGGVDILVNNAGIQHVSPVEEFPLERWDAVIAINLTSVFQAIRAALPGMKARGWGRIINVASAHGLVASVNKSAYVASKH
GVLGLTKVVGLETAETDVTCNAICPGWVLTPLVQKQIDARAEAQGVPVEQAGRDLLSEKQPSKKFTTPEQIGDLAVFLCS
GAGANMTGTSLTMDGGWTAQ
>Mature_260_residues
MLNGKRALVTGSTSGIGLGIARALAAQGASVMLNGFGDGAEIEALRAGLAKEFGVTVLYNGADLSKPDGAGVLVRDAEAR
LGGVDILVNNAGIQHVSPVEEFPLERWDAVIAINLTSVFQAIRAALPGMKARGWGRIINVASAHGLVASVNKSAYVASKH
GVLGLTKVVGLETAETDVTCNAICPGWVLTPLVQKQIDARAEAQGVPVEQAGRDLLSEKQPSKKFTTPEQIGDLAVFLCS
GAGANMTGTSLTMDGGWTAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=176, Percent_Identity=38.0681818181818, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=32.0610687022901, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=29.6875, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI31542939, Length=222, Percent_Identity=31.0810810810811, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=28.7878787878788, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=31.6326530612245, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI7705925, Length=260, Percent_Identity=30.7692307692308, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI20149619, Length=252, Percent_Identity=29.3650793650794, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI5031737, Length=265, Percent_Identity=29.4339622641509, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=33.5294117647059, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=34.5360824742268, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI59889578, Length=201, Percent_Identity=30.3482587064677, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4758504, Length=205, Percent_Identity=31.219512195122, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI126723191, Length=198, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=28.1914893617021, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=28.9256198347107, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40807363, Length=195, Percent_Identity=26.1538461538462, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI83715985, Length=178, Percent_Identity=32.0224719101124, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI142976729, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=35.2490421455939, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=35.632183908046, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790717, Length=262, Percent_Identity=32.824427480916, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=30.859375, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=31.9066147859922, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=31.9066147859922, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=27.843137254902, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=28.2945736434109, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=27.6923076923077, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=27.5303643724696, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI2367365, Length=259, Percent_Identity=28.1853281853282, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=27.34375, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=262, Percent_Identity=30.9160305343511, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=265, Percent_Identity=28.3018867924528, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=28.6274509803922, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=261, Percent_Identity=28.735632183908, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=29.9610894941634, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=29.4776119402985, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=201, Percent_Identity=30.3482587064677, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=268, Percent_Identity=27.6119402985075, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=29.0441176470588, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=30.2583025830258, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=274, Percent_Identity=28.4671532846715, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=202, Percent_Identity=27.7227722772277, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=272, Percent_Identity=28.6764705882353, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=29.3193717277487, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=29.3193717277487, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=26.865671641791, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=271, Percent_Identity=26.9372693726937, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=28.996282527881, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=271, Percent_Identity=26.5682656826568, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=28.4132841328413, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=26.9372693726937, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=209, Percent_Identity=26.7942583732057, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=199, Percent_Identity=30.6532663316583, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=204, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320089, Length=191, Percent_Identity=26.7015706806283, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=30.9803921568627, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=30.7984790874525, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=35.9375, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21357041, Length=263, Percent_Identity=30.0380228136882, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=30.2325581395349, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355319, Length=260, Percent_Identity=29.6153846153846, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=27.9693486590038, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI161076933, Length=195, Percent_Identity=33.8461538461538, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584748, Length=195, Percent_Identity=33.8461538461538, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281364892, Length=175, Percent_Identity=30.8571428571429, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=27.6264591439689, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI17737361, Length=206, Percent_Identity=29.6116504854369, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=29.0816326530612, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640492, Length=250, Percent_Identity=26.4, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355631, Length=188, Percent_Identity=30.3191489361702, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24640442, Length=200, Percent_Identity=31.5, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281364494, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571387, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.30 [H]

Molecular weight: Translated: 26787; Mature: 26787

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNGKRALVTGSTSGIGLGIARALAAQGASVMLNGFGDGAEIEALRAGLAKEFGVTVLYN
CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEC
GADLSKPDGAGVLVRDAEARLGGVDILVNNAGIQHVSPVEEFPLERWDAVIAINLTSVFQ
CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHCCHHHCCEEEEEEHHHHHH
AIRAALPGMKARGWGRIINVASAHGLVASVNKSAYVASKHGVLGLTKVVGLETAETDVTC
HHHHHCCCCCCCCCHHEEEEHHHCCEEEECCCCEEEECCCCCEEEHHHHCCCCCCCCEEE
NAICPGWVLTPLVQKQIDARAEAQGVPVEQAGRDLLSEKQPSKKFTTPEQIGDLAVFLCS
ECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHEEEEEEC
GAGANMTGTSLTMDGGWTAQ
CCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MLNGKRALVTGSTSGIGLGIARALAAQGASVMLNGFGDGAEIEALRAGLAKEFGVTVLYN
CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEC
GADLSKPDGAGVLVRDAEARLGGVDILVNNAGIQHVSPVEEFPLERWDAVIAINLTSVFQ
CCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHCCHHHCCEEEEEEHHHHHH
AIRAALPGMKARGWGRIINVASAHGLVASVNKSAYVASKHGVLGLTKVVGLETAETDVTC
HHHHHCCCCCCCCCHHEEEEHHHCCEEEECCCCEEEECCCCCEEEHHHHCCCCCCCCEEE
NAICPGWVLTPLVQKQIDARAEAQGVPVEQAGRDLLSEKQPSKKFTTPEQIGDLAVFLCS
ECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHEEEEEEC
GAGANMTGTSLTMDGGWTAQ
CCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA