| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is yaeT [H]
Identifier: 83311589
GI number: 83311589
Start: 2666606
End: 2668921
Strand: Reverse
Name: yaeT [H]
Synonym: amb2490
Alternate gene names: 83311589
Gene position: 2668921-2666606 (Counterclockwise)
Preceding gene: 83311590
Following gene: 83311588
Centisome position: 53.73
GC content: 58.89
Gene sequence:
>2316_bases GTGAGCCGGTTCCAAGGGAACGGCTTTACGAACCTAAGGGGGGCCTGGATGCGTTTCGTGCTGTGGACAGCTGTGCTGCT GGGCATTCTGGTCGGGGTGATGCCGGCGTCAGCCCAGGAAGGCGGCCGAATTCGCTCCATCTCCATTCTCGGCACCCAGC GTATCGAGGTTGAGACGGTCAAGTCGTATATGACGGTCGCCGAGGGCGATCTCTACGACACCGACCGCGTCAACCGCTCG CTGAAGGCACTGTTCAATACCGGACTTTTCCAGGACGTGGCTATCCGCCGCGAAGGCGATCAATTGCTGGTCCGCGTGGT CGAGAACCCGATCATCAATCGGATTGCCTACGAGGGAAACAATCGCATCAAGGAAGAGCAGTTGAACACCGAGGTTCAAC TGCGTCCGCGCACGGTCTATACCCGTTCCAAGGTCCAGGCCGACGTGAAGCGCATCCTGGAGCTCTACCGCCGCAGCGGT CGCTTTGCCGCCACGGTGGAGCCCAAGATCATTCAGTTGGAACAGAACCGCGTCGATCTGGTTTACGAGATCAGCGAGGG CCAGCCCACCTATGTTCGCCGCATCGCCTTCGTCGGCAATAAGCGCTATGACCAGGATAAGCTGCGCGAAGTGCTGCAGA CCAAGGAGGAGCGCTGGTATCGCTTTCTTACCACCGACGACACCTATGATCCCGACCGGGTCACATATGATCGTGAGTTG CTGCGCCGCTATTACCTGAAGCAGGGCTTTGCCGATTTCCGCGTCAGCTCCGCCATCGCCGAGCTGACGCCGTCGCGCGA GGGCTTTTTTATCACCTATACCATCGATGAGGGCGAGCGTTACAAGTTCGGTTCATCGGTGATCAACGCCGAATTGCGCG ACCTCAAGCCCGAGGACCTGCAGCCGTTGCTGATCAGCGAAACCGGCGGATGGTACAATGCTGACCAGGTGGAGGACATC GTCCAGAGGCTGACCGACGCGGTCGGCACCAAGGGCTATGCCTTCGTCGACGTGAAGCCTCAGGTGCAGCGTAATCGCGA AACTCACACCATCGACATCACTTATGAAATCAAGGAAGGCCCGCGGGTCTTCGTCGAGCGCATCGACATTTCCGGCAATG TCCGGACTCTTGACCAAGTGATCCGTCGCGAGTTCCGTCTGGTGGAGGGCGATGCCTTCAATTCGGCTAAGCTCCGCAGG TCGCGCCAACGCCTGAAGGACCTCAATTTCTTCGAGAAGGCCGAGGTCACCAATATTCCGTCCGACACGGCCCCCGACCG AACCATCATCAAGGTCGACGTTCAGGAGAAATCCACCGGCGAATTGATGTTTGGCGTCGGCTGGGCCTCCTCGGCCGGGC CGATCATCGAGGCAAGTTTGCGCGAGCGCAATTTGCTGGGCCGCGGCCAGGATCTGCGTCTGGGGGCCGGTCTTGGCACC AAGCGCAGCAGCCTGGACCTGTCGTTCACCGAGCCCTATTTCATGGATCGCGAAGTGGCTGCCGGCTTCGATGCCTTTGT GATCGACCGCAAGCTGCAGAAGGAAAGCTCCTACGATGCCTCGTCCATCGGTGGCGACCTGAGGGCCGGATATCGTCTGT CCGAGAGCCTGCGTCAGGACGTTATTTATACTCTGAAGCAGGATACGGTGAAGGGTATCAGCAGTACTTCGCCCTATGTG CTGGAGCAAATCGGCTCCAAGGTCAGTTCGGTCATCGGCCAGAGTCTGATGTATGACCGCCGGGATTCTCGTCTTGACCC AACAGAGGGCTACTTCATCAAGCTGGGAACCGACGGAGCCGGTCTCGGCGGCGATATCCGCTACCTGCGTGGTACTTTGA CGGGTGGCCAGTACTTCACCCTGACCGATAAGGTTATTCTGGGTGTCAGCAGTTCCGTCGGCTATATCTACGGCTTGGAT CAGCGGGTCCGTATTACCGATCGGTTCTTCGTGGGTGGCGATAACCTGCGCGGCTTTGCCAACGGTGGCGTCAGCCCGCG TGATAAGAATACCGGCGATGCACTGGGCGGAATCTGGCAGGCTGTCGGCTCGGCCCAGGTCAAGTTCCCGCTGGGACTGC CTGAAGAGTTCGGGGTGTCCGGTCAGGCCTTCACGGATATCGGTGCGGTTGGTGAGACCGATACGGCCGACACTGCTGCG GTTCAGCAGTCCAGCTCGGTCCGTGTTTCTCCCGGCGTCGGTATCTCCTGGAAGTCGCCTATGGGGCCGGTTTCAGTCGA TCTCGGCTACCCGTTGGTCAAAGAGAAGTTCGACAAGAAAGAATTTTTCCGGTTCAACTTTGGAACCAAGTTCTGA
Upstream 100 bases:
>100_bases TCCGAATCGGGTTGTTTCTGGTATTGGCCTTGATGGTCTTTGCCACCCGCAACGACCTTGTGTCGCTGCCGGTTTGGGAT ATGGTGAAGCGGCTGTTTTC
Downstream 100 bases:
>100_bases TCGTGCTCGCCGACACGTCCCGGCTTCACGTGGAAGAGATGTCGTGAGGAACAGCCTGTCACGCCGCCTTGCTCTGGCTG CTCGTCTGGTGTCGTTGCCA
Product: Outer membrane protein/protective antigen OMA87
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 771; Mature: 770
Protein sequence:
>771_residues MSRFQGNGFTNLRGAWMRFVLWTAVLLGILVGVMPASAQEGGRIRSISILGTQRIEVETVKSYMTVAEGDLYDTDRVNRS LKALFNTGLFQDVAIRREGDQLLVRVVENPIINRIAYEGNNRIKEEQLNTEVQLRPRTVYTRSKVQADVKRILELYRRSG RFAATVEPKIIQLEQNRVDLVYEISEGQPTYVRRIAFVGNKRYDQDKLREVLQTKEERWYRFLTTDDTYDPDRVTYDREL LRRYYLKQGFADFRVSSAIAELTPSREGFFITYTIDEGERYKFGSSVINAELRDLKPEDLQPLLISETGGWYNADQVEDI VQRLTDAVGTKGYAFVDVKPQVQRNRETHTIDITYEIKEGPRVFVERIDISGNVRTLDQVIRREFRLVEGDAFNSAKLRR SRQRLKDLNFFEKAEVTNIPSDTAPDRTIIKVDVQEKSTGELMFGVGWASSAGPIIEASLRERNLLGRGQDLRLGAGLGT KRSSLDLSFTEPYFMDREVAAGFDAFVIDRKLQKESSYDASSIGGDLRAGYRLSESLRQDVIYTLKQDTVKGISSTSPYV LEQIGSKVSSVIGQSLMYDRRDSRLDPTEGYFIKLGTDGAGLGGDIRYLRGTLTGGQYFTLTDKVILGVSSSVGYIYGLD QRVRITDRFFVGGDNLRGFANGGVSPRDKNTGDALGGIWQAVGSAQVKFPLGLPEEFGVSGQAFTDIGAVGETDTADTAA VQQSSSVRVSPGVGISWKSPMGPVSVDLGYPLVKEKFDKKEFFRFNFGTKF
Sequences:
>Translated_771_residues MSRFQGNGFTNLRGAWMRFVLWTAVLLGILVGVMPASAQEGGRIRSISILGTQRIEVETVKSYMTVAEGDLYDTDRVNRS LKALFNTGLFQDVAIRREGDQLLVRVVENPIINRIAYEGNNRIKEEQLNTEVQLRPRTVYTRSKVQADVKRILELYRRSG RFAATVEPKIIQLEQNRVDLVYEISEGQPTYVRRIAFVGNKRYDQDKLREVLQTKEERWYRFLTTDDTYDPDRVTYDREL LRRYYLKQGFADFRVSSAIAELTPSREGFFITYTIDEGERYKFGSSVINAELRDLKPEDLQPLLISETGGWYNADQVEDI VQRLTDAVGTKGYAFVDVKPQVQRNRETHTIDITYEIKEGPRVFVERIDISGNVRTLDQVIRREFRLVEGDAFNSAKLRR SRQRLKDLNFFEKAEVTNIPSDTAPDRTIIKVDVQEKSTGELMFGVGWASSAGPIIEASLRERNLLGRGQDLRLGAGLGT KRSSLDLSFTEPYFMDREVAAGFDAFVIDRKLQKESSYDASSIGGDLRAGYRLSESLRQDVIYTLKQDTVKGISSTSPYV LEQIGSKVSSVIGQSLMYDRRDSRLDPTEGYFIKLGTDGAGLGGDIRYLRGTLTGGQYFTLTDKVILGVSSSVGYIYGLD QRVRITDRFFVGGDNLRGFANGGVSPRDKNTGDALGGIWQAVGSAQVKFPLGLPEEFGVSGQAFTDIGAVGETDTADTAA VQQSSSVRVSPGVGISWKSPMGPVSVDLGYPLVKEKFDKKEFFRFNFGTKF >Mature_770_residues SRFQGNGFTNLRGAWMRFVLWTAVLLGILVGVMPASAQEGGRIRSISILGTQRIEVETVKSYMTVAEGDLYDTDRVNRSL KALFNTGLFQDVAIRREGDQLLVRVVENPIINRIAYEGNNRIKEEQLNTEVQLRPRTVYTRSKVQADVKRILELYRRSGR FAATVEPKIIQLEQNRVDLVYEISEGQPTYVRRIAFVGNKRYDQDKLREVLQTKEERWYRFLTTDDTYDPDRVTYDRELL RRYYLKQGFADFRVSSAIAELTPSREGFFITYTIDEGERYKFGSSVINAELRDLKPEDLQPLLISETGGWYNADQVEDIV QRLTDAVGTKGYAFVDVKPQVQRNRETHTIDITYEIKEGPRVFVERIDISGNVRTLDQVIRREFRLVEGDAFNSAKLRRS RQRLKDLNFFEKAEVTNIPSDTAPDRTIIKVDVQEKSTGELMFGVGWASSAGPIIEASLRERNLLGRGQDLRLGAGLGTK RSSLDLSFTEPYFMDREVAAGFDAFVIDRKLQKESSYDASSIGGDLRAGYRLSESLRQDVIYTLKQDTVKGISSTSPYVL EQIGSKVSSVIGQSLMYDRRDSRLDPTEGYFIKLGTDGAGLGGDIRYLRGTLTGGQYFTLTDKVILGVSSSVGYIYGLDQ RVRITDRFFVGGDNLRGFANGGVSPRDKNTGDALGGIWQAVGSAQVKFPLGLPEEFGVSGQAFTDIGAVGETDTADTAAV QQSSSVRVSPGVGISWKSPMGPVSVDLGYPLVKEKFDKKEFFRFNFGTKF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=809, Percent_Identity=27.4412855377009, Blast_Score=274, Evalue=1e-74, Organism=Drosophila melanogaster, GI45552629, Length=350, Percent_Identity=26.5714285714286, Blast_Score=80, Evalue=6e-15,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 86664; Mature: 86533
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFQGNGFTNLRGAWMRFVLWTAVLLGILVGVMPASAQEGGRIRSISILGTQRIEVETV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEHHHH KSYMTVAEGDLYDTDRVNRSLKALFNTGLFQDVAIRREGDQLLVRVVENPIINRIAYEGN HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCHHHHHHEECCC NRIKEEQLNTEVQLRPRTVYTRSKVQADVKRILELYRRSGRFAATVEPKIIQLEQNRVDL CCCCHHHCCCEEEEECCEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEE VYEISEGQPTYVRRIAFVGNKRYDQDKLREVLQTKEERWYRFLTTDDTYDPDRVTYDREL EEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHH LRRYYLKQGFADFRVSSAIAELTPSREGFFITYTIDEGERYKFGSSVINAELRDLKPEDL HHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHCCCCCCC QPLLISETGGWYNADQVEDIVQRLTDAVGTKGYAFVDVKPQVQRNRETHTIDITYEIKEG CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCEEEEEEEEECCC PRVFVERIDISGNVRTLDQVIRREFRLVEGDAFNSAKLRRSRQRLKDLNFFEKAEVTNIP CEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCC SDTAPDRTIIKVDVQEKSTGELMFGVGWASSAGPIIEASLRERNLLGRGQDLRLGAGLGT CCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEHHHHHHHHCCCCCCEEEECCCCC KRSSLDLSFTEPYFMDREVAAGFDAFVIDRKLQKESSYDASSIGGDLRAGYRLSESLRQD CCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCHHCCHHHHHHHHHH VIYTLKQDTVKGISSTSPYVLEQIGSKVSSVIGQSLMYDRRDSRLDPTEGYFIKLGTDGA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC GLGGDIRYLRGTLTGGQYFTLTDKVILGVSSSVGYIYGLDQRVRITDRFFVGGDNLRGFA CCCCCEEEEEEEECCCEEEEEECEEEEECCCCCCEEEECCCEEEEEEEEEECCCCCCCCC NGGVSPRDKNTGDALGGIWQAVGSAQVKFPLGLPEEFGVSGQAFTDIGAVGETDTADTAA CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCHHHCCCCCCCCCCHHHH VQQSSSVRVSPGVGISWKSPMGPVSVDLGYPLVKEKFDKKEFFRFNFGTKF HHCCCCEEECCCCCCCCCCCCCCEEEECCCCHHHHHCCCHHEEEECCCCCC >Mature Secondary Structure SRFQGNGFTNLRGAWMRFVLWTAVLLGILVGVMPASAQEGGRIRSISILGTQRIEVETV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEHHHH KSYMTVAEGDLYDTDRVNRSLKALFNTGLFQDVAIRREGDQLLVRVVENPIINRIAYEGN HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCHHHHHHEECCC NRIKEEQLNTEVQLRPRTVYTRSKVQADVKRILELYRRSGRFAATVEPKIIQLEQNRVDL CCCCHHHCCCEEEEECCEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEE VYEISEGQPTYVRRIAFVGNKRYDQDKLREVLQTKEERWYRFLTTDDTYDPDRVTYDREL EEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHH LRRYYLKQGFADFRVSSAIAELTPSREGFFITYTIDEGERYKFGSSVINAELRDLKPEDL HHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHCCCCCCC QPLLISETGGWYNADQVEDIVQRLTDAVGTKGYAFVDVKPQVQRNRETHTIDITYEIKEG CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCEEEEEEEEECCC PRVFVERIDISGNVRTLDQVIRREFRLVEGDAFNSAKLRRSRQRLKDLNFFEKAEVTNIP CEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCC SDTAPDRTIIKVDVQEKSTGELMFGVGWASSAGPIIEASLRERNLLGRGQDLRLGAGLGT CCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEHHHHHHHHCCCCCCEEEECCCCC KRSSLDLSFTEPYFMDREVAAGFDAFVIDRKLQKESSYDASSIGGDLRAGYRLSESLRQD CCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCHHCCHHHHHHHHHH VIYTLKQDTVKGISSTSPYVLEQIGSKVSSVIGQSLMYDRRDSRLDPTEGYFIKLGTDGA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC GLGGDIRYLRGTLTGGQYFTLTDKVILGVSSSVGYIYGLDQRVRITDRFFVGGDNLRGFA CCCCCEEEEEEEECCCEEEEEECEEEEECCCCCCEEEECCCEEEEEEEEEECCCCCCCCC NGGVSPRDKNTGDALGGIWQAVGSAQVKFPLGLPEEFGVSGQAFTDIGAVGETDTADTAA CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCHHHCCCCCCCCCCHHHH VQQSSSVRVSPGVGISWKSPMGPVSVDLGYPLVKEKFDKKEFFRFNFGTKF HHCCCCEEECCCCCCCCCCCCCCEEEECCCCHHHHHCCCHHEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA