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The map label for this gene is yddA [C]

Identifier: 83311330

GI number: 83311330

Start: 2428874

End: 2430769

Strand: Reverse

Name: yddA [C]

Synonym: amb2231

Alternate gene names: 83311330

Gene position: 2430769-2428874 (Counterclockwise)

Preceding gene: 83311332

Following gene: 83311315

Centisome position: 48.94

GC content: 66.46

Gene sequence:

>1896_bases
GTGAACAACGGGGCCGCAATAGGCGACGACCAGGACCTGGATCGGCAGTCGCCCGGTTTTATCAGGCAATTCATTCGCCT
GGCCGGTCCCTATTGGCAATCGGGCGAGAAGTGGAAAGTGCGCGGCCTGGCCGCCCTGCTGCTCGGCCTGACCGTGGCCC
AGGTGGTCATCCCCATTCTGATCAATCTGTGGAGCGCCGAACTGTTCGACGCGCTCGAGCAGAAATCCATGGAGAAGTTT
TTCGCCCAGATCGCCGAGATCGGGCTGATTCTGGTCGCCTCCATGACGGTGACCGCCCTGCATCTGAAGGTGAAGCGCAC
CATCCAGCTGAGCTGGCGCCGCTGGCTGACCCGCAGGCTGCAGGACAACTGGATGGCCATGGGCCACCATTACCAGCTCA
TGCATATGCCGGGCGATCACGACAATCCCGACGGCCGTATCGCCGAAGACATCCGGCTGACCACCGAGACCGCCATCGAC
CTGATCCACTCGCTGTTTTATTGCGCCCTGCTGCTGGCCAGCTTCGTGCAGATCCTGTGGACGCTGTCGGGCGATCTGAT
GCTCAACCTCGGCGGGATCGAGCTGTCCATTCCCGGCCACATGGTCTGGGTGGCCTTGATCTATGCCTCGGCGGCCTCGT
CGCTGGCCCTGTGGGTGGGGCGCCCGCTGATCGGCGCCACCGACCGCCGCCAGACGGCCGAAGCCAATTTCCGCTTCGGT
CTGGTGCGCGCCCGCGAGAATTCCGAAGCCATCGCCCTGCTGCACGGCGAAGTGGGCGAGCGCCGCCGCTTCTCTGAACT
GTTCCGCGGCATCGAGGGCGCCTGGAATCGCCAGACGGCGGGCCTGACCCGCCTGTTCCTGTTCACCTCGGGCTATGCGG
TGTTCTCCACCGCCTTCCCCATCCTGATCGCCGCGCCGCGCTACATTTCCGGCGACATTTCCCTGGGCCACCTGATGCAG
ACCGCCCAGGCCTTCCAGCAATTGTCCCAGGCCCTGTCCTGGCCGGTGGACAATCTGCAGCGGGTGGCCGAGTGGCGGGC
CTCGGTCGAGCGCGTGCTGTCCCTGCACGACGCCCTGCAGGCGCTCAGGGACGACGCCTCGCGGCCCGACGCCCATACGG
TCATCGTCCAGAAGGCGGCCATTCCCACCCTGTGCTTCCATGACCTGACCATCGCCAATTCCGACGGCACCGTGGTGATC
GAGGGCTTCAGCGCCGAAATCGTCGGTGGCGAGCATGTGCTGATCGGCGGCGATCCCGGGGCGGCGGTCAAGCTGTTCAA
GGTGGTGGCGGGGCTGTGGCCCTGGGGACGCGGCACCGTGGACCTGCCTTGCGACGCCCACATCTTCTTCATGCCGCAGC
GTCCCTACATGCCCATCGGCACGCTGCGCAGCGTGCTGACCTACCCTTCCGCCACGGAGTGCTTCCCCGACGACCAGTTG
GAAGGTGCCCTGGACCGGGTGGGCCTCGGCCATCTGATGCCGCGCATCGACGACACCGCCCTGTGGGAGCAGAACCTCAC
CGCCGGCGAGCAGCAGCGCCTGGGCTTTGCCCGCCTGCTGCTGCACCGCCCCAAATGGGTGTTCCTGCAAGAAGCCACCG
ACGCGCTCGACCCCGAGGGCGAGCGCAAGCTGATGCAGTTGCTCAACGACGAATTCCCCACCGCCTCCATCCTCACCGTG
GGCTTCCACGCCGAGCTGGAGCAGTACCACCAGCGCAAGCTGACCCTGACGCCGTCGCCGGACGGCACCATCCTGGTGCG
CGAAAGCCGCAAGGACTGGAACCAGCCCAAGCGCGGCATGAACTGGGGCGGACGCCTGTTCGGCAACCTGCTGCGCCGGG
GCGAACGCCGCGCCCTGTCCGACGGGCTGACCAAGCGCGGGGATAAGCGGCGGTAA

Upstream 100 bases:

>100_bases
CACAATGGGCACTGTGCAGGCTTCACTCGGCCGGCATTTCAGGGTTAAGTGATGACCGGGGGGAGTGCGCCTCCGACCGG
CATGCGGGATGGCAAGCAAC

Downstream 100 bases:

>100_bases
GTTGTGGGCTGCCGCCCACGCCCGCTCGGGGCCATAGGCCCCAAACCCCTTTCATGAAATCAAAATGGGGTCCGGGGCAT
CGCCCCGGATGGGTTCGGGC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 631; Mature: 631

Protein sequence:

>631_residues
MNNGAAIGDDQDLDRQSPGFIRQFIRLAGPYWQSGEKWKVRGLAALLLGLTVAQVVIPILINLWSAELFDALEQKSMEKF
FAQIAEIGLILVASMTVTALHLKVKRTIQLSWRRWLTRRLQDNWMAMGHHYQLMHMPGDHDNPDGRIAEDIRLTTETAID
LIHSLFYCALLLASFVQILWTLSGDLMLNLGGIELSIPGHMVWVALIYASAASSLALWVGRPLIGATDRRQTAEANFRFG
LVRARENSEAIALLHGEVGERRRFSELFRGIEGAWNRQTAGLTRLFLFTSGYAVFSTAFPILIAAPRYISGDISLGHLMQ
TAQAFQQLSQALSWPVDNLQRVAEWRASVERVLSLHDALQALRDDASRPDAHTVIVQKAAIPTLCFHDLTIANSDGTVVI
EGFSAEIVGGEHVLIGGDPGAAVKLFKVVAGLWPWGRGTVDLPCDAHIFFMPQRPYMPIGTLRSVLTYPSATECFPDDQL
EGALDRVGLGHLMPRIDDTALWEQNLTAGEQQRLGFARLLLHRPKWVFLQEATDALDPEGERKLMQLLNDEFPTASILTV
GFHAELEQYHQRKLTLTPSPDGTILVRESRKDWNQPKRGMNWGGRLFGNLLRRGERRALSDGLTKRGDKRR

Sequences:

>Translated_631_residues
MNNGAAIGDDQDLDRQSPGFIRQFIRLAGPYWQSGEKWKVRGLAALLLGLTVAQVVIPILINLWSAELFDALEQKSMEKF
FAQIAEIGLILVASMTVTALHLKVKRTIQLSWRRWLTRRLQDNWMAMGHHYQLMHMPGDHDNPDGRIAEDIRLTTETAID
LIHSLFYCALLLASFVQILWTLSGDLMLNLGGIELSIPGHMVWVALIYASAASSLALWVGRPLIGATDRRQTAEANFRFG
LVRARENSEAIALLHGEVGERRRFSELFRGIEGAWNRQTAGLTRLFLFTSGYAVFSTAFPILIAAPRYISGDISLGHLMQ
TAQAFQQLSQALSWPVDNLQRVAEWRASVERVLSLHDALQALRDDASRPDAHTVIVQKAAIPTLCFHDLTIANSDGTVVI
EGFSAEIVGGEHVLIGGDPGAAVKLFKVVAGLWPWGRGTVDLPCDAHIFFMPQRPYMPIGTLRSVLTYPSATECFPDDQL
EGALDRVGLGHLMPRIDDTALWEQNLTAGEQQRLGFARLLLHRPKWVFLQEATDALDPEGERKLMQLLNDEFPTASILTV
GFHAELEQYHQRKLTLTPSPDGTILVRESRKDWNQPKRGMNWGGRLFGNLLRRGERRALSDGLTKRGDKRR
>Mature_631_residues
MNNGAAIGDDQDLDRQSPGFIRQFIRLAGPYWQSGEKWKVRGLAALLLGLTVAQVVIPILINLWSAELFDALEQKSMEKF
FAQIAEIGLILVASMTVTALHLKVKRTIQLSWRRWLTRRLQDNWMAMGHHYQLMHMPGDHDNPDGRIAEDIRLTTETAID
LIHSLFYCALLLASFVQILWTLSGDLMLNLGGIELSIPGHMVWVALIYASAASSLALWVGRPLIGATDRRQTAEANFRFG
LVRARENSEAIALLHGEVGERRRFSELFRGIEGAWNRQTAGLTRLFLFTSGYAVFSTAFPILIAAPRYISGDISLGHLMQ
TAQAFQQLSQALSWPVDNLQRVAEWRASVERVLSLHDALQALRDDASRPDAHTVIVQKAAIPTLCFHDLTIANSDGTVVI
EGFSAEIVGGEHVLIGGDPGAAVKLFKVVAGLWPWGRGTVDLPCDAHIFFMPQRPYMPIGTLRSVLTYPSATECFPDDQL
EGALDRVGLGHLMPRIDDTALWEQNLTAGEQQRLGFARLLLHRPKWVFLQEATDALDPEGERKLMQLLNDEFPTASILTV
GFHAELEQYHQRKLTLTPSPDGTILVRESRKDWNQPKRGMNWGGRLFGNLLRRGERRALSDGLTKRGDKRR

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=479, Percent_Identity=26.0960334029228, Blast_Score=135, Evalue=2e-31,
Organism=Homo sapiens, GI9945308, Length=571, Percent_Identity=22.4168126094571, Blast_Score=123, Evalue=7e-28,
Organism=Homo sapiens, GI7262393, Length=196, Percent_Identity=33.1632653061224, Blast_Score=115, Evalue=2e-25,
Organism=Homo sapiens, GI4826958, Length=563, Percent_Identity=23.9786856127886, Blast_Score=114, Evalue=2e-25,
Organism=Escherichia coli, GI1787772, Length=553, Percent_Identity=29.2947558770344, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI1787112, Length=364, Percent_Identity=25.2747252747253, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17532409, Length=597, Percent_Identity=23.4505862646566, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17542146, Length=613, Percent_Identity=23.4910277324633, Blast_Score=125, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17532411, Length=603, Percent_Identity=22.5538971807629, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17564250, Length=588, Percent_Identity=23.9795918367347, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI72000520, Length=557, Percent_Identity=24.2369838420108, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17558960, Length=641, Percent_Identity=21.216848673947, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI72000518, Length=613, Percent_Identity=22.6753670473083, Blast_Score=98, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6325110, Length=211, Percent_Identity=30.8056872037915, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643394, Length=484, Percent_Identity=25, Blast_Score=122, Evalue=6e-28,
Organism=Drosophila melanogaster, GI24638550, Length=601, Percent_Identity=23.1281198003328, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638552, Length=601, Percent_Identity=23.1281198003328, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638554, Length=601, Percent_Identity=23.1281198003328, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638546, Length=601, Percent_Identity=23.1281198003328, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638556, Length=601, Percent_Identity=23.1281198003328, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638548, Length=601, Percent_Identity=23.1281198003328, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638558, Length=536, Percent_Identity=23.6940298507463, Blast_Score=113, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 70606; Mature: 70606

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGAAIGDDQDLDRQSPGFIRQFIRLAGPYWQSGEKWKVRGLAALLLGLTVAQVVIPIL
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
INLWSAELFDALEQKSMEKFFAQIAEIGLILVASMTVTALHLKVKRTIQLSWRRWLTRRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDNWMAMGHHYQLMHMPGDHDNPDGRIAEDIRLTTETAIDLIHSLFYCALLLASFVQILW
HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSGDLMLNLGGIELSIPGHMVWVALIYASAASSLALWVGRPLIGATDRRQTAEANFRFG
HCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEE
LVRARENSEAIALLHGEVGERRRFSELFRGIEGAWNRQTAGLTRLFLFTSGYAVFSTAFP
EEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
ILIAAPRYISGDISLGHLMQTAQAFQQLSQALSWPVDNLQRVAEWRASVERVLSLHDALQ
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALRDDASRPDAHTVIVQKAAIPTLCFHDLTIANSDGTVVIEGFSAEIVGGEHVLIGGDPG
HHHCCCCCCCCCEEEEEHHCCCHHHHCCEEEECCCCEEEEECCCEEEECCCEEEEECCCC
AAVKLFKVVAGLWPWGRGTVDLPCDAHIFFMPQRPYMPIGTLRSVLTYPSATECFPDDQL
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHH
EGALDRVGLGHLMPRIDDTALWEQNLTAGEQQRLGFARLLLHRPKWVFLQEATDALDPEG
HHHHHHCCHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCH
ERKLMQLLNDEFPTASILTVGFHAELEQYHQRKLTLTPSPDGTILVRESRKDWNQPKRGM
HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCCCCCCC
NWGGRLFGNLLRRGERRALSDGLTKRGDKRR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNGAAIGDDQDLDRQSPGFIRQFIRLAGPYWQSGEKWKVRGLAALLLGLTVAQVVIPIL
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
INLWSAELFDALEQKSMEKFFAQIAEIGLILVASMTVTALHLKVKRTIQLSWRRWLTRRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDNWMAMGHHYQLMHMPGDHDNPDGRIAEDIRLTTETAIDLIHSLFYCALLLASFVQILW
HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSGDLMLNLGGIELSIPGHMVWVALIYASAASSLALWVGRPLIGATDRRQTAEANFRFG
HCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEE
LVRARENSEAIALLHGEVGERRRFSELFRGIEGAWNRQTAGLTRLFLFTSGYAVFSTAFP
EEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
ILIAAPRYISGDISLGHLMQTAQAFQQLSQALSWPVDNLQRVAEWRASVERVLSLHDALQ
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALRDDASRPDAHTVIVQKAAIPTLCFHDLTIANSDGTVVIEGFSAEIVGGEHVLIGGDPG
HHHCCCCCCCCCEEEEEHHCCCHHHHCCEEEECCCCEEEEECCCEEEECCCEEEEECCCC
AAVKLFKVVAGLWPWGRGTVDLPCDAHIFFMPQRPYMPIGTLRSVLTYPSATECFPDDQL
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHH
EGALDRVGLGHLMPRIDDTALWEQNLTAGEQQRLGFARLLLHRPKWVFLQEATDALDPEG
HHHHHHCCHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCH
ERKLMQLLNDEFPTASILTVGFHAELEQYHQRKLTLTPSPDGTILVRESRKDWNQPKRGM
HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCCCCCCC
NWGGRLFGNLLRRGERRALSDGLTKRGDKRR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]